Skip to main content

Table 3 miRNA target genes identified in barley and confirmed by previous studies

From: A computational-based update on microRNAs and their targets in barley (Hordeum vulgare L.)

miRNA family

miRNA name

Unigene

Unigene annotation

Literature reported target for this miRNA (citation number in brackets)

156

miR156

Hv.29207

protein coding (SBP domain)

Arabidopsis thaliana[24]

 

miR156

Hv.5875

protein coding (SBP domain)

Oryza sativa[8]

 

miR156

Hv.28351

protein coding (SBP domain)

Hordeum vulgare[2]

 

miR156

Hv.21387

SPL2 (SQUAMOSA PROMOTER BINDING PROTEIN-LIKE 2)

Triticum aestivum[2]

 

miR156

Hv.28414

SPL5 (SQUAMOSA PROMOTER BINDING PROTEIN-LIKE 5)

 
    

Arabidopsis thaliana[24]

159

miR159

Hv.12

MYB family transcription factor

Oryza sativa[39]

    

Hordeum vulgare[2]

    

Triticum aestivum[2]

    

Arabidopsis thaliana[24]

160

miR160

Hv.5089

ARF16 (AUXIN RESPONSE FACTOR 16)

Oryza sativa[39]

    

Hordeum vulgare[2]

    

Triticum aestivum[2]

164

miR164

Hv.877

NAC domain containing protein

Arabidopsis thaliana[24]

 

miR164

Hv.28795

NAC domain containing protein

Zea mays[14]

 

miR164

Hv.25370

NAM superfamily

Hordeum vulgare[2]

 

miR164

Hv.21779

NAC domain containing protein

Triticum aestivum[2]

168

miR168

Hv.26206

AGO1 (ARGONAUTE 1)

Arabidopsis thaliana[24]

 

miR168

Hv.19452

AGO1 (ARGONAUTE 1)

Hordeum vulgare[2]

    

Triticum aestivum[2]

169

miR169

Hv.13681

CCAAT-binding transcription factor (CBF-B/NF-YA) family protein

Aquilegia coerulea[40]

 

miR169

Hv.406

CCAAT-binding transcription factor (CBF-B/NF-YA) family protein

Hordeum vulgare[2]

 

miR169

Hv.9532

CCAAT-binding transcription factor (CBF-B/NF-YA) family protein

Triticum aestivum[2]

    

Arabidopsis thaliana[24]

171

miR171

Hv.9855

GRAS family transcription factor

Brachypodium distachyon[41]

    

Hordeum vulgare[2]

    

Triticum aestivum[2]

    

Arabidopsis[42]

172

miR172

Hv.6575

RAP2.7/TOE1 (TARGET OF EAT1 1), AP2 superfamily

Hordeum vulgare[2]

    

Triticum aestivum[2]

393

miR393

Hv.29376

AFB2 (AUXIN SIGNALING F-BOX 2), auxin binding/ubiquitin-protein ligase

Aquilegia coerulea[40]

 

miR393

Hv.2498

TIR1 (TRANSPORT INHIBITOR RESPONSE 1), ubiquitin-protein ligase

Hordeum vulgare[2]

    

Triticum aestivum[2]

    

Aquilegia coerulea[40]

394

miR394

Hv.8877

F-box family protein

Hordeum vulgare[2]

    

Triticum aestivum[2]

    

Aquilegia coerulea[40]

395

miR395

Hv.12870

ATPS1

Hordeum vulgare[2]

    

Triticum aestivum[2]

396

miR396

Hv.28722

WRC, QLQ

 
 

miR396

Hv.22031

growth-regulating factor

Arabidopsis thaliana[39]

 

miR396

Hv.19321

WRC, QLQ

Oryza sativa[39]

 

miR396

Hv.9742

WRC, QLQ

Triticum aestivum[2]

399

miR399

Hv.5443

ATUBC24/PHO2/UBC24 (PHOSPHATE 2), ubiquitin-protein ligase

Arabidopsis thaliana[39]

    

Oryza sativa[39]

408

miR408

Hv.10831

ARPN (PLANTACYANIN), copper ion binding (Cu-bind-like superfamily)

Medicago truncatula[43]

    

Populus trichocarpa[44]

 

miR408

Hv.24052

Plastocyanin-like domain-containing protein (Cu-bind-like superfamily)

Oryza sativa[45]

    

Hordeum vulgare[2]

    

Triticum aestivum[2]

 

miR408

Hv.20945

ARGONAUTE like superfamily

Hordeum vulgare[2]

529

miR529

Hv.29207

protein coding (SBP domain)

Aquilegia coerulea[40]

 

miR529

Hv.28351

protein coding (SBP domain)

Zea Mays[46]

    

Arabidopsis thaliana[47]

827

miR827

HV. 10218

SPX superfamily, MFS superfamily

Oryza sativa[48]