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Table 4 Plant repeat element content of C. melo non-redundant sequences

From: Genome-wide BAC-end sequencing of Cucumis melo using two BAC libraries

  

BCM - RCM

Class

Element

No.

Total

%

Retroelements

  

2,030

3.8

LINES

 

30

  
 

L1

30

  

LTR

 

2,000

  
 

Ty1/Copia

1,250

  
 

Ty3/Gypsy

709

  
 

Unclassified

41

  

DNA transposons

  

335

1.9

 

hobo-Activator

35

  
 

En-Spm

171

  
 

MuDR

102

  
 

Harbinger

5

  
 

Unclassified

22

  

Rolling circles

  

12

0.02

 

Helitron

12

  

Telomere-related

Sequences

  

3

 

rRNA genes

  

105

0.3

 

Small subunit

36

  
 

Large subunit

62

  
 

45S and Internal spacer region

7

  

Total no. of

repeat elements

  

2,484

6.0