EcoTILLING in Capsicum species: searching for new virus resistances

BMC Genomics

Table 2 Differences in amino acid substitutions of detected haplotypes in the eIF4E gene.

eIF4E protein	New allele names	Published proteins		Exon and amino acid position^a
		Allele name	Cultivar or accession	1	1	1	1	1	1	1	1	1	1	2	2	2	3	5	5	5	5	5	5
				15	51	65	66	67	71	73	74	77	79	107	109	131	160	213	214	216	218	219	221
eIF4E_B		pvr2 ⁺	Yolo Wonder	A	T	N	P	V	K	A	A	S	L	G	D	T	E	D	D	K	L	D	N
eIF4E_A		pvr2 ²	Dempsey	-	-	-	-	E	-	-	-	-	R	-	N	-	-	-	-	-	-	-	-
eIF4E_E		pvr2 ¹	Yolo Y	-	-	-	-	E	-	-	-	-	R	-	-	-	-	-	-	-	-	-	-
eIF4E_R	pvr2 ¹⁷			V	-	-	-	-	R	-	-	-	-	-	-	-	-	-	-	-	-	-	-
eIF4E_C	pvr2 ¹⁵			T	-	-	-	-	R	-	-	-	-	-	-	-	-	-	-	-	-	-	-
eIF4E_Q	pvr2 ²²			-	-	-	-	-	R	-	-	I	-	-	-	-	-	-	-	-	-	-	-
eIF4E_F		pvr1 ⁺	Habanero	-	-	-	-	-	R	-	-	-	-	-	-	-	-	-	-	-	-	-	-
eIF4E_G	pvr2 ¹⁶			-	-	-	-	-	R	-	-	-	-	-	-	I	-	-	-	-	-	-	-
eIF4E_L	pvr2 ¹⁹			-	-	-	-	-	R	-	-	-	R	-	-	-	-	-	-	-	-	-	-
eIF4E_J	pvr2 ¹⁸			-	-	-	-	-	R	-	-	-	-	-	-	-	G	-	E	A	-	E	-
eIF4E_N	pvr2 ¹³			-	-	D	-	-	R	-	D	-	-	-	-	-	-	-	-	-	-	-	-
eIF4E_O	pvr2 ¹⁴			-	-	D	-	-	R	-	-	-	-	-	-	-	-	-	-	-	-	-	-
eIF4E_H	pvr2 ¹¹			-	-	D	-	-	R	-	-	-	-	-	-	-	-	H	-	-	R	-	-
eIF4E_K	pvr2 ¹²			-	-	D	-	-	R	D	-	-	-	-	-	-	-	-	-	-	-	-	-
eIF4E_Sh^b	-			-	-	D	-	-	R	-	D	-	-	-	-	I	-	-	-	-	-	-	S
eIF4E_M	pvr2 ²⁰			-	-	-	-	-	R	T	-	-	-	-	-	-	-	-	-	-	-	-	-
eIF4E_I		pvr1	PI152225	-	A	-	T	-	R	-	-	-	-	R	-	-	-	-	-	-	-	-	-
eIF4E_D	pvr2 ¹⁰			-	-	-	T	-	R	D	-	-	-	R	-	-	-	-	-	-	F	-	-
eIF4E_P	pvr2 ²¹			-	A	-	-	-	R	-	-	-	-	-	-	-	-	-	-	-	-	-	-

a, The alignment and amino acid positions are numbered according to the published eIF4E protein of pvr2⁺ allele. b, Protein from eIF4E_Sh1- inferred haplotype was not named but had been used to analyse the variable positions.

ISSN: 1471-2164