Table 2 Comparison of microarray and RT-PCR analysis of selected genes, differentially regulated during Cr (VI) stress in rice
From: Transcriptomic and metabolomic shifts in rice roots in response to Cr (VI) stress
Locus ID | Description | Microarray (Log2) | RT-PCR (Log2) |
|---|---|---|---|
LOC_Os07g33780 | PDR-like ABC transporter, putative, expressed | 14.07 | 33.59 ± 0.25 |
LOC_Os08g30770 | ABC transporter, ATP-binding protein, putative, expressed | 9.3 | 12.84 ± 3.31 |
LOC_Os01g50100 | ABC transporter, ATP-binding protein, putative, expressed | 57.54 | 93.05 ± 0.009 |
LOC_Os04g13210 | Multidrug resistance-associated protein 4, putative, expressed | 22.92 | 20.11 ± 0.06 |
LOC_Os06g03560 | Oligopeptide transporter 9, putative, expressed | 3.63 | 3.83 ± 0.08 |
LOC_Os04g50940 | Peptide transporter PTR2, putative, expressed | 9.39 | 3.83 ± 0.24 |
LOC_Os01g52130 | Sulfate transporter 3.5, putative, expressed | 13.22 | 16.45 ± 0.04 |
LOC_Os01g41810 | Cytochrome P450 72A1, putative, expressed | 71.1 | 139.10 ± 0.08 |
LOC_Os02g36030 | Cytochrome P450 76C2, putative, expressed | 41.12 | 448.82 ± 0.08 |
LOC_Os01g43740 | Cytochrome P450 72A1, putative, expressed | 39.85 | 80.45 ± 0.15 |
LOC_Os03g12500 | Cytochrome P450 74A2, putative, expressed | 30.15 | 120.26 ± 0.002 |
LOC_Os01g41820 | Cytochrome P450 72A1, putative, expressed | 26.32 | 182.28 ± 0.2 |
LOC_Os03g55240 | Cytochrome P450 81E1, putative, expressed | 23.35 | 87.43 ± 0.18 |
LOC_Os06g45960 | Cytochrome P450 CYP99A1, putative, expressed | 22.74 | 171.25 ± 0.27 |
LOC_Os01g37750 | Glutathione S-transferase GSTU6, putative, expressed | 74.43 | 347.29 ± 0.56 |
LOC_Os10g38350 | Glutathione S-transferase GSTU6, putative, expressed | 16.85 | 4.96 ± 0.03 |
LOC_Os10g38495 | Glutathione S-transferase GSTU6, putative, expressed | 15.23 | 74.02 ± 0.19 |
LOC_Os10g38610 | Glutathione S-transferase GSTU6, putative, expressed | 12.61 | 15.24 ± 0.03 |
LOC_Os01g72150 | Glutathione S-transferase, putative, expressed | 14.75 | 30.06 ± 0.13 |
LOC_Os03g16920 | Heat shock cognate 70 kDa protein (DnaK family protein), putative, expressed | 63.42 | 2683.69 ± 12.4 |
LOC_Os05g38530 | Heat shock cognate 70 kDa protein (DnaK family protein), putative, expressed | 12.71 | 5.43 ± 0.81 |
LOC_Os03g16030 | 17.4 kDa class I heat shock protein 3, putative, expressed | 12.56 | 7.88 ± 0.09 |