Population- and genome-specific patterns of linkage disequilibrium and SNP variation in spring and winter wheat (Triticum aestivum L.)

Table 2 Average estimates of minor allele frequency, number of alleles per locus, and polymorphism information content.

Population	Growth Habit	Origin	Number of lines	Proportion of polymorphic SNPs, (%)	MAF	Number of alleles	PIC
SD	winter	SD	21	79.5	0.13	1.62	0.14
NE	winter	NE	49	84.8	0.12	1.7	0.14
OK	winter	OK	40	84.8	0.14	1.7	0.16
WB	winter	WestBred	11	78.4	0.15	1.59	0.16
CO	winter	CO	30	82.7	0.13	1.64	0.15
TX	winter	TX	38	85	0.14	1.73	0.16
MT	winter	MT	34	82.6	0.12	1.65	0.14
KS	winter	KS	4	64.9	0.1	1.32	0.1
NY	winter	NY	10	70.3	0.1	1.44	0.11
Winter wheat	winter		237	89.2	0.14	1.89	0.17
WB	spring	WestBred	30	82.4	0.14	1.66	0.16
SD	spring	SD	40	80.7	0.13	1.6	0.14
MT	spring	MT	30	85	0.17	1.71	0.18
MN	spring	MN	40	84.8	0.14	1.71	0.16
ID	spring	ID	30	83.2	0.16	1.65	0.17
WA	spring	WA	10	78.1	0.15	1.56	0.16
CA	spring	CA	30	87	0.16	1.72	0.18
CM	spring	CIMMYT	31	85.2	0.14	1.72	0.16
Spring wheat	spring		241	89.1	0.18	1.94	0.2
Total			478		0.18	2	0.2

ISSN: 1471-2164