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Table 5 Copy number of the four cis-elements identified in the upstream regions of 55 commonly induced genes

From: Genome-wide temporal-spatial gene expression profiling of drought responsiveness in rice

No

Gene ID

Annotation

S1

S2

S3

S4

1

Os08g0104400

expressed protein

1

   

2

Os01g0705200

late embryogenesis abundant protein 3

8

3

4

 

3

Os12g0478200

ABA-responsive protein

2

   

4

Os03g0305600

expressed protein

3

1

  

5

Os01g0225600

late embryogenesis abundant protein Lea14-A

2

1

  

6

Os09g0109600

expressed protein

1

   

7

Os05g0542500

late embryogenesis abundant protein 3

4

1

  

8

Os11g0454300

water stress-inducible protein Rab21

8

3

 

1

9

Os02g0140800

expressed protein

1

 

1

 

10

Os01g0214500

conserved hypothetical protein

5

2

2

 

11

Os04g0266900

transketolase, chloroplast precursor

5

1

2

 

12

Os01g0124400

Bowman-Birk type bran trypsin inhibitor precursor

1

 

1

 

13

Os11g0582300

protein SEY1

7

1

1

1

14

Os07g0563400

fiber expressed protein, putative, expressed

7

5

2

 

15

Os10g0548100

expressed protein

17

9

5

5

16

Os01g0226400

ATP binding protein, putative, expressed

8

7

3

2

17

Os06g0698300

protein phosphatase 2C

12

3

 

1

18

Os01g0867300

G-box-binding factor 4

4

2

3

1

19

Os01g0654400

seed maturation protein PM41

4

1

2

 

20

Os10g0505900

expressed protein

5

 

1

 

21

Os01g0743500

NADP-dependent malic enzyme

11

4

3

1

22

Os02g0649300

homeobox-leucine zipper protein ATHB-6

7

1

1

 

23

Os01g0950900

HYP1

16

8

8

3

24

Os06g0324400

protein LEA25

1

   

25

Os03g0133100

expressed protein

13

5

1

3

26

Os05g0572700

protein phosphatase 2C ABI1

21

9

3

2

27

Os11g0454200

dehydrin Rab16B

2

1

1

 

28

Os12g0147200

expressed protein

7

3

2

2

29

Os03g0623100

expressed protein

4

3

  

30

Os05g0373900

eukaryotic peptide chain release factor subunit 1-1

5

1

  

31

Os11g0454000

dehydrin Rab16C

1

   

32

Os08g0327700

seed maturation protein

5

2

1

 

33

Os04g0610600

embryonic protein DC-8

10

4

3

2

34

Os06g0246500

pyruvate dehydrogenase E1 component alpha subunit

17

5

3

3

35

Os01g0844300

FK506-binding protein 4

4

2

1

 

36

Os03g0723400

expressed protein

1

   

37

Os06g0341300

late embryogenesis abundant protein D-34

7

1

  

38

Os06g0681200

early nodulin 20 precursor

2

1

  

39

Os08g0442900

fibroin heavy chain precursor

5

2

1

 

40

Os05g0550600

nonspecific lipid-transfer protein AKCS9 precursor

14

4

5

1

41

Os03g0168100

embryonic protein DC-8

7

3

1

 

42

Os03g0168000

expressed protein

9

5

2

1

43

Os04g0589800

seed maturation protein

6

5

2

3

44

Os01g0794400

protein disulfide isomerase, putative, expressed

2

1

 

1

45

Os06g0651200

expressed protein

6

   

46

Os11g0453900

dehydrin Rab16D

9

3

1

1

47

Os01g0303300

stress-inducible membrane pore protein

13

1

1

 

48

Os05g0468800

expressed protein

12

7

3

2

49

Os11g32890

expressed protein

    

50

Os03g0277300

heat shock cognate 70 kDa protein

    

51

Os05g0122700

expressed protein

    

52

Os11g0181200

expressed protein

    

53

Os11g43790

expressed protein

    

54

Os03g0286900

expressed protein

    

55

Os01g0743600

ATP-dependent peptidase

    
  1. Note: Log2 transformed ratios of drought stress and control