Classification | Cypress (PSC) | LaGrue (PSL) | Ilpumbyeo (PSI) | YR15965 (PSY) | Nipponbare (PSN) | |||||
---|---|---|---|---|---|---|---|---|---|---|
 | MPSS | SBS | MPSS | SBS | MPSS | SBS | MPSS | SBS | MPSS | SBS |
Number of reads | 1,266,713 | 3,718,464 | 1,082,099 | 2,326,663 | 1,201,584 | 3,293,394 | 1,190,250 | 2,634,791 | 1,207,914 | 4,110,241 |
Distinct signatures | 12,660 | 103,741 | 18,297 | 165,129 | 17,783 | 83,071 | 12,379 | 77,023 | 16,499 | 104,531 |
Significant signatures | 10,099 | 30,571 | 14,253 | 36,335 | 13,971 | 25,915 | 10,402 | 23,302 | 13,116 | 34,165 |
Non-significant signatures | 2,561 | 73,170 | 4,044 | 128,794 | 3,812 | 57,156 | 1,977 | 53,721 | 3,383 | 70,366 |
1-100 TPM | 10,705 | 101,187 | 16,280 | 161,929 | 15,605 | 80,069 | 10,449 | 74,564 | 14,486 | 101,894 |
101-1,000 TPM | 1,783 | 2,312 | 1,827 | 2,896 | 1,985 | 2,704 | 1,741 | 2,226 | 1,815 | 2,389 |
1,001-10,000 TPM | 157 | 228 | 177 | 290 | 183 | 284 | 176 | 218 | 186 | 234 |
>10,000 TPM | 15 | 14 | 13 | 14 | 10 | 14 | 13 | 15 | 12 | 14 |
Total signatures matched to the Nipponbare genome | 10,940 | 22,872 | 15,813 | 17,521 | 15,276 | 20,032 | 10,678 | 18,313 | 14,378 | 28,118 |
Significant signatures matched to the Nipponbare genome | 8,855 (80.9%) | 21,582 (94.3%) | 12,534 (79.2%) | 15,514 (88.5%) | 12,313 (80.6%) | 19,000 (94.8%) | 9,118 (85.3%) | 17,477 (95.4%) | 11,622 (80.8%) | 25,777 (91.6%) |
Significant signatures specifically identified by either MPSS or SBS | 2,359 | 22,831 | 3,869 | 25,951 | 5,219 | 17,163 | 3,216 | 16,116 | 3,669 | 24,718 |
Significant signatures identified by both MPSS and SBS | 7,740 (77% overlap) | 10,384 (73% overlap) | 8,752 (62% overlap) | 7,186 (70% overlap) | 9,447 (72% overlap) |