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Table 5 Comparison of microarray and quantitative real-time-PCR (qRT-PCR) quantifications of gene expression.

From: Analysis of Gene expression in soybean (Glycine max) roots in response to the root knot nematode Meloidogyne incognita using microarrays and KEGG pathways

Gene

Fold Change comparison for 12 dai

Fold Change comparison for 10 wai

Jasmonic acid

RT-PCR

Microarray

RT-PCR

Microarray

LOX1

65.3

22.6

42.2

-9.9

AOS

0.0

-59.3

0.0

-77.4

AOC

0.1

-6.3

0.3

0

OPR2

9.1

5

  

OPR3

  

0.1

-8.8

Cell Wall

    

PECT.

49.4

47.5

  

CELL.

1.0

-4.6

  

CCOA-OMT12

25.0

2.6

  

CCOA-OMT10

  

1.5

1.9

C3H12

2.7

2.9

  

C3H10

0

0

9.4

8.4

F5H

78.6

15.4

88.9

20.5

Cell Cycle

    

CDKB2

16.7

5.2

5.8

3.1

CYCD3

1.0

0

0.2

-2.9

  1. Note: Gray boxes refer to untested genes in a specific time point.