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Table 3 Module-specific transcription factors (TF) according to the odds ratio.

From: Genome-wide patterns of promoter sharing and co-expression in bovine skeletal muscle

Module

Number of TF

Identity of TF

Cell Cycle

33

ARID5B CHR CREB1 E2F1 ETS1 FOXM1 FOXN1 GATA1 GATA3 GCM1 HBP1 HLTF HOXC9 ILF1 MARE MTBF MYF5 MZF1 NFE2L2 NFYA NKX61 NRF1 PBX_HOXA9 PRDM16 PRRX2 SOX5 SP1 TBX5 TGIF1 USF WT1 ZNF239 ZSCAN21

Fat

36

AARE ABL1 ATF6 CUX1 DLX3 DREAM E4F1 ESRRB EVI1 GATA2 HSF2 IK2 IKZF1 LHX3 MASH1 MAZ MSX MYT1 MYT1L NEUROG1 NFE2L1 NKX25 PAX4 RUNX1 RUNX2 SOX2 STAT TAL1 TEF TFCP2 TFII-IR4 ZBTB7B ZEB1 ZIC2 ZNF148 ZNF384

Immune

9

CDX1 CREL ETV4 JARID1B MEIS1 SIX3 TP53 VMYB YBX1

Mitochondria

22

CEBPZ DLX1 GSH2 HNF3B IKZF3 JUN KAISO LHX9 LMX1B MEF2C MSX1 NF1 NFAT5 POU2F1 POU3F1 RELA SIX SMAD3 SPZ1 XFD2 YY1 ZNF35

Muscle/Glycolysis

24

AREB6 BARX2 FAC1 GFI1 GLI1 HIF1A HNF4A KLF10 KLF13 KLF4 MSX2 MYCN NFE2 NFKB1 NOBOX SF1 SMAD2 SMAD4 SOX9 TTF1 YY2 ZF5 ZFX ZNF300

Ribosome

3

CREB2 MYCMAX ZNF219