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Table 2 SNVs detected

From: ngs_backbone: a pipeline for read cleaning, mapping and SNP calling using Next Generation Sequence

 

SA

IL

HL

SNVs

17237

19052

23306

Indels

3389

3044

5410

SNPs

13848

16008

27896

SNVs_HVR4

16575

17005

30827

SNVs_MAF0.80

-

9903

-

SNVs_HVR4_MAF0.80

16575

9640

23360

  1. SA: Sanger collection: SNVs detected with Sanger sequences.
  2. IL: Illumina collection: SNVs detected with Illumina sequences.
  3. HL: Higher likelihood collection: SNVs detected with Illumina and Sanger sequences.