Table 1 RNA-MATE and Galaxy tag mapping distribution
Total tags | 329,923,262 |
Total tags mapping to genome (mm9) | 136,122,785 (41.3%) |
Total unique tags | 107,339,260 (32.5%) |
Number of RefSeq genes (> 1RPKM) | 12,083 |
Number of transcripts (> 1RPKM) | 15,527 |
Unique tags matching RefSeq NM exons | 66,591,988 (62%) |
Unique tags matching consensus gene exons models (RefSeq, Aceview, Ensembl, UCSC genes) | 82,841,356 (77.1%) |
Total unique junction tags | 7,769,426 |
Total unique miRNA tags | 788,931 |