| 2268 AF | 2268 liver | 2268 LD | 2270 AF | 2270 liver | 2270 LD |
---|---|---|---|---|---|---|
total reads | 40,000,000 | 38,808,956 | 39,020,950 | 40,000,000 | 40,133,362 | 39,164,798 |
total unmapped reads | 14,293,709 | 13,771,813 | 14,076,474 | 15,445,291 | 14,285,367 | 13,457,962 |
reads perfectly matched to the reference genome | 16,867,579 | 17,398,322 | 12,737,195 | 15,882,824 | 17,575,361 | 13,920,553 |
reads with < = 2 bp mismatch to the reference genome | 8,838,712 | 7,638,821 | 12,207,281 | 8,671,885 | 8,272,634 | 11,786,283 |
reads uniquely matched to the reference genome | 22,908,741 | 22,998,328 | 23,301,854 | 21,235,855 | 23,695,323 | 23,823,564 |
reads matched to the reference genome with multi-positions | 2,797,550 | 2,038,815 | 1,642,622 | 3,318,854 | 2,152,672 | 1,883,272 |
annotated genes identified in this study | 19,062 | 17,382 | 15,612 | 18,695 | 17,447 | 15,716 |
reads uniquely matched to annotated genes | 8,508,418 | 9,465,873 | 8,615,406 | 9,075,466 | 10,219,332 | 9,530,691 |
reads matched to annotated genes with multi-positions | 10,648,618 | 15,009,898 | 13,906,877 | 10,839,003 | 15,072,157 | 13,441,905 |
novel transcript units | 122,931 | 71,394 | 48,045 | 112,052 | 72,401 | 69,677 |
clustered transcriptionally active regions | 29,499 | 22,871 | 17,085 | 25,842 | 21,840 | 22,099 |
alternative splicing genes | 2882 | 1,851 | 1,859 | 2,832 | 2,116 | 1,657 |
5' extended genes | 815 | 610 | 587 | 793 | 697 | 593 |
3' extended genes | 1,201 | 1,375 | 1,075 | 1,360 | 1,224 | 1,064 |
Genes extended both 5' and 3' ends | 672 | 551 | 432 | 636 | 590 | 411 |