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Figure 2 | BMC Genomics

Figure 2

From: Array Comparative Genomic Hybridizations: Assessing the ability to recapture evolutionary relationships using an in silico approach

Figure 2

Program Flow. The diagram indicates the simulation program flow used to construct the supermatrix, our simulated CGH data matrix. Variables that can be modified include the number of sequences input, the topology of the tree used, and the amount of divergence among taxa in the simulated alignment, and the choice of evolutionary model to evolve and calculate genetic distance among taxa (see methods). Neighbor-Joining (NJ) and Parsimony Majority-Rule (PMR) trees were constructed from the supermatrix.

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BMC Genomics

ISSN: 1471-2164

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