Table 3 Most differentially expressed annotated genes in L1 vs. L2, L3 vs. L4, L5 vs. L6, and L7 vs. L8 libraries based on expressed tag frequency

L1 vs. L2 up

Glyma13g17820

1009.41

polyubiquitin

Glyma14g09420

428.92

Papain family cysteine protease

Glyma18g50500

362.37

Unknown

Glyma18g03310

101.05

Hs1pro-1-like receptor

Glyma18g46060

74.04

Rpp4 candidate

L1 vs. L2 down

Glyma18g51330

25.83

NSP-interacting kinase

Glyma13g36750

17.27

Endocytosis

Glyma08g43410

13.51

BRG-1 ASSOCIATED FACTOR 60

Glyma15g02250

11.63

MYB transcription factor MYB52

Glyma04g37460

11.29

DEK PROTEIN

L3 vs. L4 up

Glyma02g45690

61.76

similar to PDF

Glyma09g02210

57.05

Serine/threonine protein kinase

Glyma10g40580

33.32

Gibberellin regulated protein

Glyma05g04490

25.12

Protease inhibitor/seed storage/LTP family

Glyma14g05300

24.6

Glycosyl hydrolases family 17

L3 vs. L4 down

Glyma09g04150

223.25

unknown

Glyma19g38570

94.8

Late embryogenesis abundant protein

Glyma11g37360

35.34

Glyceraldehyde 3-phosphate dehydrogenase

Glyma08g28800

28.14

Ribosomal protein L7Ae/L30e/S12e/Gadd45 family

Glyma06g14330

27.8

Ribosomal protein L6

L5 vs. L6 up

Glyma03g08020

240.28

ABC transporter related protein

Glyma19g43830

52.95

cyclophilin

Glyma16g26950

41.45

protein-l-isoaspartate methyltransferase

Glyma01g30060

32.87

CBR-TTR-47 protein

Glyma14g02700

26.84

OTU-like cysteine protease family protein

L5 vs. L6 down

Glyma19g38570

193.57

harpin inducing protein

Glyma18g47100

62.39

conserved hypothetical protein

Glyma04g40170

39.29

methyl esterase 17

Glyma18g09290

36.76

disease resistance protein

Glyma18g45250

34.4

vestitone reductase

L7 vs. L8 up

Glyma16g24920

106.6

functional candidate resistance protein KR1

Glyma12g04380

62.54

transcription factor homolog BTF3-like protein

Glyma19g36060

40.17

glutathione S-transferase omega

Glyma04g16010

17.8

hypothetical protein

Glyma14g07190

17.63

dehydration-responsive family protein

L7 vs. L8 down

Glyma18g45250

102.34

NAD dependent epimerase/dehydratase family

Glyma06g14330

79.32

Ribosomal protein L6

Glyma03g03830

61.24

UDP-glucuronosyl and UDP-glucosyl transferase

Glyma01g05800

42.47

membrane associated ring finger 1,8

Glyma05g35490

34.97

predicted protein