Table 1 Statistics of the physical map assembly of the common carp
From: Generation of the first BAC-based physical map of the common carp genome
Total number of BAC clones fingerprinted | 89,088 | ~7.3× genome equivalent |
|---|---|---|
Valid fingerprints for FPC assembly | 72,158 | ~5.9× genome coverage |
Total number of contigs assembled | 3696 | Â |
Clones contained in the 3696 contigs | 67,493 | ~5.5× genome coverage |
Average BAC clones per contig | 18.26 | Â |
Average contig size in consensus bands (CB) | 334 | Â |
Estimated average contig size (kb) | 476 | Â |
Estimated N50 contig size (kb) | 688 | Â |
Number of Q-contigs | 884 | Â |
Number of Q-clones | 1448 | Â |
Number of singletons | 4665 | Â |
Average insert size of the BAC library (kb) | 141 | Â |
Average number of bands per fingerprinted BAC clone | 98.7 | Â |
Average size each band represents (kb) | 1.428 | Â |
Total number of bands included in the contigs | 1,234,511 | 18.2 bands per BAC clone in the consensus map |
Total physical length of assembled contigs | 1.76 Gb | ~1× genome size |