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Table 1 Number of de novo assemblies and "align-then-assembled" transcripts.

From: RNA-Seq improves annotation of protein-coding genes in the cucumber genome

Tissues

# RNA-Seq reads

# De novo assembled transcripts

Mapped reads

# "Align-then-assembled" transcripts

Ovary

19, 247, 768

86, 994

17, 656, 392 (91.7%)

52, 530

Fertilized ovary

18, 466, 067

81, 650

17, 047, 763 (92.3%)

50, 987

Unfertilized ovary

19, 111, 746

84, 628

17, 394, 685 (91.0%)

52, 003

Root

18, 732, 466

86, 572

17, 162, 238 (91.6%)

52, 167

Stem

24, 535, 215

71, 977

22, 789, 659 (92.9%)

45, 710

Leaf

26, 400, 675

79, 344

24, 405, 569 (92.4%)

49, 351

Male flower

26, 050, 858

83, 957

24, 531, 662 (94.2%)

51, 630

Female flower

23, 818, 868

85, 345

21, 886, 487 (91.9%)

51, 701

Tendril

22, 472, 146

71, 489

20, 585, 234 (91.6%)

44, 658

Base part of tendril

21, 653, 855

70, 260

19, 556, 866 (90.3%)

44, 995