| | = | C | e | i | j | o | p | u | Total |
|---|
Large White
| 2178 | 22243 | 11328 | 67989 | 5557 | 3866 | 6775 | 72288 | 192224 |
(%)
| 1.13 | 11.57 | 5.89 | 35.37 | 2.89 | 2.01 | 3.52 | 37.61 | 100 |
Iberian
| 2000 | 21580 | 10349 | 57623 | 4530 | 3341 | 5752 | 55617 | 160792 |
(%)
| 1.24 | 13.42 | 6.44 | 35.84 | 2.82 | 2.08 | 3.58 | 34.59 | 100 |
- The number of transcripts assembled with Cufflinks and the percentage they represent in each sample. The high number of assembled transcripts is probably an artifact due to truncated Cufflinks assemblies. Class codes described by Cuffcompare: "=" Exactly equal to the reference annotation, "c " Contained in the reference, annotation, "e" possible pre-mRNA molecule, "i " An exon falling into a intron of the reference, "j " New isoforms, "o" Unknown, generic overlap with reference, "p" Possible polymerase run-on fragment, "u" Unknown, intergenic transcript.
