Table 4 SNP annotation
From: Exploring the gonad transcriptome of two extreme male pigs with RNA-seq
Fixed | Segregating | |||
|---|---|---|---|---|
Large White | Iberian | Large White | Iberian | |
Synonymous coding | 2083 | 1727 | 1352 | 757 |
Non synonymous coding | 1073 | 910 | 852 | 494 |
5' UTR | 150 | 77 | 73 | 39 |
3' UTR | 1187 | 1029 | 1004 | 622 |
Stop lost | 3 | 1 | 0 | 4 |
Stop gained | 1 | 3 | 7 | 9 |
Intronic | 15101 | 13020 | 3388 | 2515 |
5'Upstream | 2983 | 2588 | 1176 | 628 |
3'Downstream | 9440 | 8549 | 5579 | 3831 |
Splice site | 311 | 259 | 91 | 86 |
Non synonymous coding | 1073 | 910 | 852 | 494 |
Within non coding gene | 262 | 268 | 14 | 9 |
Intergenic | 5847 | 5042 | 1539 | 1076 |