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Table 2 Composition of the MetJ regulon for the five orders

From: The MetJ regulon in gammaproteobacteria determined by comparative genomics methods

 

Ent

Sym

Pas

Vib

Aer

Alt

All

species

122

16

20

16

3

29

206

metJ

*122 (122)

2 (0)

20 (15)

16 (16)

3 (3)

29 (28)

192 (184)

metR

*122 (122)

2 (1)

19 (3)

16 (16)

3 (3)

26 (22)

188 (167)

metL

122 (117)

--

--

16 (16)

3 (2)

26 (24)

167 (159)

metA

*122 (120)

3 (0)

--

16 (15)

3 (3)

27 (9)

171 (147)

metX/1/2

--

--

*19 (19)

--

--

--

19 (19)

metY

12 (0)

--

1 (0)

4 (0)

3 (2)

*25 (18)

45 (20)

metB

*122 (122)

3 (0)

--

16 (16)

3 (3)

25 (25)

169 (166)

metC

*119 (81)

3 (0)

19 (0)

16 (0)

--

24 (8)

181 (89)

metF

*122 (122)

13 (0)

18 (2)

16 (16)

2 (2)

23 (23)

194 (165)

metF2

--

--

--

--

--

5 (4)

5 (4)

metH

*112 (1)

--

9 (0)

*16 (16)

3 (2)

*28 (26)

168 (45)

metE

*122 (122)

13 (1)

17 (14)

16 (16)

3 (3)

19 (18)

190 (174)

metK

*122 (119)

14 (0)

20 (15)

16 (3)

3 (0)

29 (7)

204 (144)

ybdH/2

*101 (79)

--

--

--

--

--

101 (79)

mtrA

*41 (19)

--

--

--

--

--

41 (19)

mtrC

41 (19)

--

--

--

--

--

41 (19)

mtrB/2

*40 (26)

--

--

--

--

--

40 (26)

mtrY/2

31 (9)

--

--

--

--

--

31 (9)

mtnK

*38 (35)

--

--

1 (0)

--

1 (1)

40 (36)

mtnA

*38 (35)

--

--

--

--

1 (1)

39 (36)

mtnD

35 (29)

--

--

--

--

1 (1)

36 (30)

mtnC

35 (35)

--

--

--

--

22 (1)

57 (36)

mtnB

*35 (35)

--

--

--

--

2 (2)

37 (37)

mtnE

*105 (99)

--

--

--

--

3 (1)

108 (100)

metNIQ

*122 (121)

1 (1)

20 (16)

16 (16)

3 (3)

2 (2)

164 (159)

metT

--

--

--

*11 (11)

2 (2)

*26 (26)

39 (39)

btuB

*116 (34)

--

3 (0)

16 (6)

3 (2)

27 (6)

165 (48)

mtsABC

--

--

--

10 (6)

--

--

10 (6)

nhaP

--

--

10 (0)

*16 (16)

2 (2)

1 (0)

29 (18)

mmuPM

*21 (21)

--

--

--

--

--

21 (21)

MHT1/dppABCD

9 (9)

--

--

--

--

--

9 (9)

MHT2/arcD

--

--

5 (0)

1 (1)

2 (2)

6 (6)

14 (9)

metE2a

*28 (28)

--

--

--

--

--

28 (28)

mtcBC

20 (4)

--

--

--

--

2 (0)

22 (4)

pcbC/megL

--

--

--

--

2 (0)

5 (5)

7 (5)

  1. The number of species within an order that have each gene are indicated and the number of those genes that have metboxes is in parentheses. Symbiotic Enterobacteria have been counted separately. Genes from an order that were tested experimentally for repression are marked with an asterisk.