Whole genome resequencing of black Angus and Holstein cattle for SNP and CNV discovery

BMC Genomics

Table 6 Summary of CNVs

BTA	Chromosome length	% length in CNV	Total CNV length	No. CNV	Mean length	Median length	Max length	Min length
1	161,106,243	0.028	44,913	11	4,083	4,148	7,151	2,861
2	140,800,416	0.102	143,068	32	4,471	4,865	10,257	2,629
3	127,923,604	0.135	173,057	27	6,410	5,435	28,029	2,861
4	124,454,208	0.000	0	0	0	0	0	0
5	125,847,759	0.246	309,452	51	6,068	6,435	19,448	2,860
6	122,561,022	0.292	358,280	56	6,398	5,610	20,911	2,549
7	112,078,216	0.243	272,175	95	2,865	3,421	9,881	1,901
8	116,942,821	0.163	190,373	37	5,145	5,131	13,111	2,849
9	108,145,351	0.057	61,772	14	4,412	3,949	7,051	2,821
10	106,383,598	0.090	96,123	25	3,845	3,727	8,481	2,569
11	110,171,769	0.075	82,123	31	2,649	2,813	4,499	2,249
12	85,358,539	0.255	217,445	49	4,438	5,005	9,731	2,781
13	84,419,198	0.180	152,086	64	2,376	2,758	3,939	1,969
14	81,345,643	0.113	91,924	26	3,536	3,752	5,628	2,680
15	84,633,453	0.125	106,076	30	3,536	3,611	10,209	2,489
16	77,906,053	0.039	30,688	6	5,115	3,562	14,248	2,740
17	76,506,943	0.048	36,720	11	3,338	3,510	6,480	2,700
18	66,141,439	0.851	563,154	120	4,693	6,100	18,405	2,141
19	65,312,493	0.035	22,660	6	3,777	2,987	6,723	2,489
20	75,796,353	0.036	27,332	8	3,416	3,589	4,141	2,761
21	69,173,390	0.064	44,293	13	3,407	3,568	5,413	2,461
22	61,848,140	0.031	19,408	4	4,852	4,033	8,821	2,521
23	53,376,148	0.095	50,750	12	4,229	3,500	12,000	2,500
24	65,020,233	0.053	34,298	10	3,430	3,307	5,389	2,449
25	44,060,403	0.000	0	0	0	0	0	0
26	51,750,746	0.134	69,401	33	2,103	2,301	2,761	1,841
27	48,749,334	0.144	70,250	14	5,018	4,126	20,071	2,231
28	46,084,206	0.045	20,587	5	4,117	3,943	5,913	2,409
29	51,998,940	0.000	0	0	0	0	0	0
TOTAL	2,545,896,661	0.129	3,288,408	790	4,163	3,171	28,029	1,841

The distribution and size characteristics of CNVs detected through comparison of the Holstein and Black Angus read sets mapped to the Btau4.0 reference assembly.

ISSN: 1471-2164