From: Nuclear Receptor HNF4α Binding Sequences are Widespread in Alu Repeats
Sorted by number of HNF4α sites | Sorted by prevalence of HNF4α sites | ||||||
---|---|---|---|---|---|---|---|
Transposon | # with H4 | # in hg18 | % | Transposon | # with H4 | # in hg18 | % |
MIRb | 2333 | 223,605 | 1.04 | SVA_C | 215 | 281 | 76.51 |
L2a | 2256 | 169,417 | 1.33 | SVA_B | 341 | 465 | 73.33 |
MIR | 1586 | 173,924 | 0.91 | SVA_D | 932 | 1370 | 68.03 |
L2c | 1455 | 139,570 | 1.04 | SVA_A | 132 | 259 | 50.97 |
Tigger2a | 1186 | 3,316 | 35.77 | (CCGGA)n | 1 | 2 | 50.00 |
L2b | 1050 | 96,999 | 1.08 | HSATI | 19 | 42 | 45.24 |
FRAM | 1005 | 8,490 | 11.84 | LTR22A | 80 | 187 | 42.78 |
SVA_D | 932 | 1,370 | 68.03 | Tigger2a | 1186 | 3316 | 35.77 |
L2 | 898 | 56,019 | 1.60 | HERV-Fc2-int | 1 | 3 | 33.33 |
MIR3 | 849 | 90,205 | 0.94 | HERVE-int | 80 | 250 | 32.00 |
MIRc | 828 | 102,646 | 0.81 | SVA_F | 278 | 998 | 27.86 |
MSTA-int | 730 | 3,104 | 23.52 | Tigger2b_Pri | 528 | 2000 | 26.40 |
L1PB1 | 698 | 13,202 | 5.29 | PABL_A | 126 | 511 | 24.66 |
MLT2A2 | 646 | 3,865 | 16.71 | MSTB2-int | 22 | 91 | 24.18 |
MER20 | 608 | 16,569 | 3.67 | MSTA-int | 730 | 3104 | 23.52 |
L1MC1 | 605 | 12,979 | 4.66 | MER50 | 573 | 2527 | 22.68 |
MER50 | 573 | 2,527 | 22.68 | LTR14B | 78 | 357 | 21.85 |
Tigger2 | 546 | 2,735 | 19.96 | MSTB-int | 187 | 866 | 21.59 |
Tigger2b_Pri | 528 | 2,000 | 26.40 | MER8 | 408 | 1931 | 21.13 |
L1M5 | 482 | 63,783 | 0.76 | MSTC-int | 38 | 183 | 20.77 |
MLT1D | 473 | 20,459 | 2.31 | Tigger2 | 546 | 2735 | 19.96 |