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Table 2 P. hawaiensis transcriptome BLAST results

From: De novo assembly and characterization of a maternal and developmental transcriptome for the emerging model crustacean Parhyale hawaiensis

 

# Sequences

# BLAST hits against nr1(%)

# Unique BLAST hits against nr1(%)

Isogroups

25,735

n/a2

n/a2

Isotigs

35,301

10,424 (29.5%)

10,203 (28.9%)

Contigs

89,664

9,715 (10.8%)

n/a3

Singletons

276,564

9,583 (3.5%)

8,864 (3.2%)

Total Non-Redundant Assembly Sequences (= isotigs + singletons)

311,865

20,007 (6.4%)

19,067 (6.1%)

  1. 1. nr = NCBI non-redundant database
  2. 2. Because isogroups are collections of isotigs that are hypothesized to originate from the same gene, they do not comprise a single sequence and so cannot be compared by BLAST to nr.
  3. 3. The custom script UniqueBlast.pl was applied only to non-redundant assembly sequences (i.e. isotigs and singletons).