Category | Sequenced loci(a) | Total SNPs | Validated SNPs | False positive SNPs | False positive SNPs due to reference | False positive SNPs due to mapped reads | SNP validation rate % |
---|---|---|---|---|---|---|---|
Sequence category | |||||||
Genes | 130 | 187 | 157 | 30 | 5 | 25 | 84.0 |
Repeat junctions | 52 | 67 | 59 | 8 | 4 | 4 | 88.0 |
Uncharacterized | 43 | 48 | 39 | 9 | 5 | 4 | 81.3 |
Total | 225 | 302 | 255 | 47 | 14 | 33 | 84.4 |
Sequencing platforms | |||||||
AB SOLiD | 181 | 246 | 217 | 29 | 11 | 18 | 88.2 |
Roche 454 | 19 | 35 | 25 | 10 | 2 | 8 | 71.4 |
Illumina Solexa | 84 | 96 | 82 | 14 | 6 | 8 | 85.4 |
Total(b) | 284 | 377 | 324 | 53 | 19 | 34 | 85.9 |