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Table 3 The performance of i-rDNA algorithm in six different simulated metagenomic scenarios.

From: i-rDNA: alignment-free algorithm for rapid in silico detection of ribosomal gene fragments from metagenomic sequence data sets

Source of the query sequence

Percentage of 16S rDNA gene fragments correctly identified by i-rDNA algorithm

 

Length of the query sequences

 

800 bp

400 bp

250 bp

100 bp

New species

96.4

94.1

91.3

85.3

New genus

94.5

91.3

85.3

71.2

New family

93.5

90.2

84.1

70.6

New order

92.3

90.1

84.8

70.6

New class

91.0

90.0

83.8

70.0

New phylum

89.2

88.4

82.4

69.5