Skip to main content

Table 4 Sources of protein sequences and annotations.

From: Functional characterization of protein domains common to animal viruses and mouse

Resource

data type

data source

Mouse proteins

Protein sequence

Ensembl

Viral proteins

Protein sequence

RefSeq2

UniProt/SwissProt

Protein sequence

UniProt3

UniRef90

Protein sequence

UniProt3

CDD

Protein domains

NCBI4

NCBI Taxonomy

Taxonomy

NCBI5

eSLDB

Subcellular localization

eSLDB6

GO

Gene ontology

Gene Ontology7

  1. 1http://www.ensembl.org, 2http://0-www-ncbi-nlm-nih-gov.brum.beds.ac.uk/RefSeq/, 3http://www.uniprot.org, 4http://0-www-ncbi-nlm-nih-gov.brum.beds.ac.uk/Structure/cdd/cdd.shtml, 5http://www.ncbi.nlm.nih.gov/Taxonomy/taxonomyhome.html/, 6http://gpcr2.biocomp.unibo.it/esldb/, 7http://www.geneontology.org/
Back to article page

BMC Genomics

ISSN: 1471-2164

Contact us