Table 5 Estimates of time required for taxonomic binning of some real metagenomic data sets
Metagenome | Total number of sequences | Sequence length range | Approximate estimate of time (in minutes) need for binning | Reference (s) | ||||
|---|---|---|---|---|---|---|---|---|
| Â | Â | Â | INDUS | TACOA | SOrt-ITEMS | MEGAN | SPHINX | Â |
Global Ocean Survey | 7521215 | ~800bp | 10530 (~ 7 days) | 129580 (~90 days) | 319330 (~221 days) | 287095 (199 days) | 15901 (11 days) | |
Lean and obese mouse metagenome | 1744283 | ~100bp | 1544 (~ 1 day) | 8771 (6 days) | 52097 (36 days) | 48390 (33 days) | 2093 (1.5 days) | [21] |
Malnourished child metagenome | 1496170 | ~250bp - 400bp | 1795 (1.2 days) | 17526 (12 days) | 51297 (~36 days) | 44885 (~31 days) | 2308 (1.6 days) | [22] |
Acid Mine Drainage | 180713 | ~800bp | 252 | 3113 | 7672 | 6898 | 382 | [23] |