Skip to main content

Table 4 Occurrence of C. metallidurans CH34 metal resistance gene clusters in C. metallidurans strains as indicated by CGHa, b

From: Variation in genomic islands contribute to genome plasticity in Cupriavidus metallidurans

Gene cluster in CH34c, d

AS39

AS167

AS168

KT01

KT02

KT21

SV661

CH42

CH79

31A

NE12

NA1

NA2

NA4

43015

45957

cdfX, pbr R 2 cadA pbrC 2 ,

       

XAC 2

XAC 2

XAC 2

 

XAC 2

XAC 2

XAC 2

XAC 2

XAC 2

pbr R 3

                

pbrU b |U a T R pbrABCD

   

R

    

UbUa

     

UbRAD

UbRABCD

mer R TPA'A″

  

R

R

   

R

R

R

 

RPA

RPA

R

R

RA

mer R TPADE urf-2

                

mer R TPADE urf-2

                

mer R T ΔP

       

RT ΔP

RT ΔP

RT ΔP

RT ΔP

RT ΔP

RT ΔP

RT ΔP

RT ΔP

RT ΔP

ChrBAF

  

F

F

    

BF

 

BF

BF

BF

   

chrIBACE F ONPYZ

       

IBACEOY

IBACEFOY

 

Z

 

BO

 

O

 

cusDCBAF

  

D

D

  

D

DB

D

D

  

D

  

D

silDCBA cus ΔF

   

C

          

F

F

cop SR ABCD

S

S

SC

SC

C

C

SC

SC

C

SC

C

C

C

 

SC

C

copV-W(*)

  

IJF

KCIJFOH

  

FH

         

czcL RS ubiG czcB a |B b CI

  

I

I

    

I

     

I

I

zntA

                

czcMNICBAD RS EJ ompP

  

B

BS

    

ompP

  

S

S ompP

S

  

czcP

           

ompP

    

nimBA a |A b C

C

C

BC

BC

C

 

C

C

BC

BC

    

C

C

cnr YXH CBAT

HC

HC

YHC

HC

HC

C

HC

YXHCBA

YXHCBAT

C

HC

HC

YXHCA

C

C

 

nccCB″B'A nreB

  

CB'

CB

  

B'

CB"B'A

  

B"

B"

  

CB'

CB"B'A

arsPHC 1 BC 2 IRM

                

cupRAC

   

R

    

R

       

agrCBA RS

 

S

S

        

B

    

hmz RS hmzB ΔA

RB

RB

RBA

RBA

R

R

B

RSBΔA

RSBΔA

RSBΔA

R

R

B

RSBΔA

R

R

hmvCB ΔA

   

CB

    

C

 

BA

BA

BA

BA

 

A

zniABC SR zneP RS CAB (#)

C i

C i

C i

C i

C i

C i

C i

C i

C i

C i

C i

C i C e

C i C e

C i

  

hmyCB|hmyA

  

C

C

      

A

A

    
  1. aOnly genes that did not display positive hybridization signals are shown. bSee ref. [8] for the extensive and descriptive table with metal detoxifications in C. metallidurans CH34. cUnderlined genes are regulators; dInsertion (IS or Tn), frameshift and truncation are indicated by (|), (','') and (Δ), respectively. *Complete cluster is copVTKMN SR ABCDIJGFOLQHEW; #zniC (Ci) and zneC (Ce).
Back to article page

BMC Genomics

ISSN: 1471-2164

Contact us