Skip to main content

Table 1 Summary of de novo sequence assembly

From: De novo assembly and characterization of the root transcriptome of Aegilops variabilis during an interaction with the cereal cyst nematode

 

Sequences (n)

Base pairs (Mbp)

Length range (bp)

Mean length (bp)

N50 (bp)

Clean reads

52,081,238

4,687.31

90-90

90

90

SOAP contigs

336,641

60.21

60-3911

200

229

Trinity contigs

481,672

92.50

75-3696

192

250

SOAP unigenes

130,487

45.86

150-4113

351

392

Trinity unigenes

118,064

59.09

200-4214

500

599

Back to article page

BMC Genomics

ISSN: 1471-2164

Contact us