Figure 3

Genomic distribution of enhancer and promoter-like candidates. (A) Pie charts representing the genomic distributions of the high confidence Enh and PrL candidates (prob ≥ 0.8) and top 30 k unknown candidates. Intergenic regions are defined to be regions ≥ 10 kb away from the closest TSS or transcription end site; whereas upstream regions are regions within 10 kb upstream of TSSs. (B) Violin plots demonstrating the distances to TSS of the closest transcript for each high probability set (Enh and PrL: prob ≥0.8; unknown: top 30,000).