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Table 2 Variants detected across the 1.5Mb of targeted sequence

From: Polymorphism discovery and allele frequency estimation using high-throughput DNA sequencing of target-enriched pooled DNA samples

 

Shared between pools

Unique in Low CIV pool2

Unique to High CIV pool2

 

SNP

Indel

SNP

Indel

SNP

Indel

5' and 3' UTR

547

86

93

50

118

58

Exonic1

278 (153)

29

57 (38)

17

65 (45)

19

Intronic

2226

277

310

189

441

168

  1. 1: Numbers in parenthesis represent the number of SNPs resulting in non synonymous substitutions; 2: Variants classified as unique represent variants undetected in the corresponding pool.