From: The footprint of metabolism in the organization of mammalian genomes
KOG classes | Categories | # | GC3 | s.d. |
---|---|---|---|---|
 | INFORMATION STORAGE AND PROCESSING |  |  |  |
[A] | RNA processing and modification | 600 | 0.517 | 0.151 |
[B] | Chromatin structure and dynamics | 224 | 0.610 | 0.172 |
[J] | Translation, ribosomal structure and biogenesis | 1273 | 0.545 | 0.117 |
[K] | Transcription | 1137 | 0.619 | 0.170 |
[L] | Replication, recombination and repair | 300 | 0.546 | 0.154 |
 | CELLULAR PROCESSES AND SIGNALING |  |  |  |
[D] | Cell cycle control, cell division, chromosome partitioning | 267 | 0.552 | 0.160 |
[M] | Cell wall/membrane/envelope biogenesis | 63 | 0.576 | 0.164 |
[N] | Cell motility | 26 | 0.586 | 0.163 |
[O] | Posttranslational modification, protein turnover, chaperones | 1471 | 0.557 | 0.151 |
[T] | Signal transduction mechanisms | 2214 | 0.616 | 0.158 |
[U] | Intracellular trafficking, secretion, and vesicular transport | 685 | 0.571 | 0.161 |
[V] | Defense mechanisms | 1023 | 0.527 | 0.172 |
[W] | Extracellular structures | 284 | 0.588 | 0.150 |
[Y] | Nuclear structure | 17 | 0.534 | 0.150 |
[Z] | Cytoskeleton | 801 | 0.638 | 0.158 |
 | METABOLISM |  |  |  |
[C] | Energy production and conversion | 403 | 0.576 | 0.153 |
[E] | Amino acid transport and metabolism | 499 | 0.618 | 0.154 |
[F] | Nucleotide transport and metabolism | 187 | 0.588 | 0.151 |
[G] | Carbohydrate transport and metabolism | 469 | 0.606 | 0.150 |
[H] | Coenzyme transport and metabolism | 102 | 0.563 | 0.135 |
[I] | Lipid transport and metabolism | 410 | 0.595 | 0.154 |
[P] | Inorganic ion transport and metabolism | 402 | 0.646 | 0.161 |
[Q] | Secondary metabolites biosynthesis, transport and catabolism | 191 | 0.591 | 0.155 |
 | POORLY CHARACTERIZED |  |  |  |
[R] | General function prediction only | 1889 | 0.593 | 0.162 |
[S] | Function unknown | 1171 | 0.568 | 0.162 |
 | Total number of genes | 16118 | 0.584 | 0.160 |