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Table 2 Transcription factors association with gene data set

From: The dependence of expression of NF-κB-dependent genes: statistics and evolutionary conservation of control sequences in the promoter and in the 3′ UTR

Rank

Matrix

Transcription factor

Combined

Corrected

p-value

p-value

1

NFKB_Q6_01

Nf-κb1 , Nf-κb2

6. × 10-18

3.57 × 10-15

2

NFKAPPAB65_01

Rela

7.31 × 10-17

2.02 × 10-14

3

CREL_01

C-rel

1.21 × 10-16

2.24 × 10-14

4

NFKAPPAB_01

Rela

1.68 × 10-16

2.32 × 10-14

5

NFKB_C

N/A

7.56 × 10-14

8.37 × 10-12

6

NFKB_Q6

N/A

1.44 × 10-13

1.33 × 10-11

7

NFKAPPAB50_01

N/A

5.08 × 10-9

4.02 × 10-7

8

WHN_B

Foxn1

2.15 × 10-7

1.49 × 10-5

9

DEAF1_01

Deaf-1

8.96 × 10-6

5.52 × 10-4

10

SP1_Q2_01

Sp1 , Sp2

1.61 × 10-5

8.91 × 10-4

  1. TRAP results for TFs associated with input set of human promoter sequences. TRAP settings: background model: human promoters. p-Values for the individual sequences are combined using Fisher’s method. For multiple test correction Benjamini-Hochberg (BH) method was chosen. Matrix names correspond to the TRANSFAC database.