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Table 4 Number of SPPs and Contigs containing SPPs identified for each class/species by DP analysis

From: Development and application of a 6.5 million feature Affymetrix Genechip® for massively parallel discovery of single position polymorphisms in lettuce (Lactuca spp.)

a)

Species

Contigs

SPPs

 

L. sativa

394

507

 

L. serriola

293

431

 

L. saligna

3,651

6,729

 

L. virosa

3,315

7,023

 

L. perennis

13,305

28,774

 

Total Markers

20,958

43,464

b)

L. Sativa types

4,412

8,211

 

Butterhead

1,956

3,531

 

Cos

1,931

3,420

 

Batavia

2,135

3,840

 

Iceberg

1,279

2,343

 

Leafy

3,467

6,178

 

Oil only

364

557

  1. a) The number of contigs containing SPPs and the number of SPPs private to the genotypes within a species. These SPPs distinguish all the genotypes in a species from all others in the panel. b) The number of contigs containing SPPs and the number of SPPs for each L. sativa horticultural class. These markers are polymorphic within a class but not specific to that class.