Skip to main content

Table 2 Distribution and GlnR-mediated regulation of genes related to central nitrogen metabolism within the order Lactobacillales

From: Comparative genome analysis of central nitrogen metabolism and its control by GlnR in the class Bacilli

NCBI PROJECT NAME \ GENES

codY

tnrA

glnR

glnA

gdh

bdh

glutamin- ase (HA)

glutamin- ase (LA)

gltAB

gltA BC

gltS

amtB

glnK

glnQHMP

glnP H Q

glnT, alsT, yrbD, yflA

gltP, dctA, gltT, yhcL, nqt

B) order Lactobacillales

                 

Enterococcus faecalis V583

1

 

1

1

1

      

1

 

1

1

 

3

Lactobacillus acidophilus NCFM

   

1

       

1

 

2

   

L. helveticus DPC 4571

   

1

       

1

 

2

  

1

L. crispatus ST1

   

1

   

1

     

2

   

L. gasseri ATCC 33323

   

1

  

1

      

2

  

1

L. johnsonii FI9785

   

1

  

1

      

2

  

1

L. bulgaricus ATCC 11842

   

1

       

1

 

3

   

L. fermentum IFO 3956

   

1

       

1

  

1

 

1

L. reuteri JCM 1112

   

1

  

1

1

   

1

 

1

1

 

1

L. brevis ATCC 367

  

1

1

       

1

 

1

  

1

L. plantarum WCFS1

  

1

1

1

      

1

 

1

1

 

1

L. salivarius UCC118

  

1

1

1

      

1

 

1

2(1) e

 

1

L. casei BL23

  

1

2(1)

1,0

   

1

  

1

 

1

1 b

  

L. rhamnosus GG

  

1

2(1)

1

   

1

  

2(1)

 

1

1 b

  

L. sakei 23 K

  

1

1

          

1

 

2

Pc. pentosaceus ATCC 25745

  

1

1

          

1

 

1

Leuconostoc citreum KM20

  

1

1

       

1

 

1

1 b

  

Ln. mesenteroides ATCC 8293

  

1

1

    

1

  

1

 

2

1 b

  

Oenococcus oeni PSU-1

  

1

1

       

1

 

1

1 d

  

Lactococcus lactis Il1403

1a

 

1

1

    

1

  

1

1

 

1 c

  

Streptococcus mutans UA159

1

 

1

1

1

   

1

  

1

1

1

1 c

1

 

S. equi

1

 

1

1

1

         

1 c

1

 

S. uberis 0140 J

1

 

1

1

1

        

1

1 c

1

 

S. gordonii str. Challis substr. CH1

1

 

1

1

1

         

1 c

 

1

S. thermophilus CNRZ1066

1

 

1

1

1

      

1

1

1

1 c

1

 

S. sanguinis SK36

1

 

1

1

1

        

1

1 c

1

 

S. pneumoniae R6

1

 

1

1

1

        

1

1 c

1

 

S. mitis B6

1

 

1

1

1

      

1

1

1

1 c

1

 

S. agalactiae NEM316

1

 

1

1

1

      

1

 

1

1 c

1

 

S. pyogenes M1 GAS

1

 

1

1

          

1 c

1

 

S. suis BM407

1

 

1

1

1

        

1

1 c

1

 
  1. The table summarizes the data retrieved for all species and strains which can be found in Additional file 1. The number of orthologs/homologs in every genome is indicated. For Gene content and how GlnR-mediated regulation is indicated see the legend of Table 1. Every species is represented by one strain only. Species abbreviations: L., Lactobacillus; Ln., Leuconostoc; Pc., Pediococcus; S., Streptococcus.
  2. a) L. lactis has a codY paralog named codZ[41].
  3. b) There is a second glnPH gene located next to the glnPH,Q operon.
  4. c) The glnPH gene encodes two H domains.
  5. d) In O. oeni the gene glnPH is in one operon with a gene encoding an asparaginase, whereas a glnQ homolog is missing.
  6. e) In L. salivarius a second glnPH gene is not part of an operon and is located elsewhere on the genome with respect to the glnPHQ operon.
Back to article page

BMC Genomics

ISSN: 1471-2164

Contact us