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Table 3 Unigenes of MVA and MEP pathways identified in this research

From: De novo assembly and characterization of bark transcriptome using Illumina sequencing and development of EST-SSR markers in rubber tree (Hevea brasiliensis Muell. Arg.)

Pathway

Gene name

Accession number of matched genes*

MVA pathway

isopentenyl-diphosphate Delta-isomerase (IDI)

BAF98286.1 (2)

 

acetyl-CoA C-acetyltransferase (AACT)

BAF98276.1 (2), ZP_08629444.1 (1), BAF98277.1 (1), AAL18924.1 (1)

 

hydroxymethylglutaryl-CoA synthase (HMGS)

BAF98279.1 (1)

 

hydroxymethylglutaryl-CoA reductase (HMGR)

P29057.1 (1), BAF98280.1 (1)

 

mevalonate kinase (MVK)

AAL18925.1 (1),

 

phosphomevalonate kinase (PMK)

BAF98284.1 (1), AAL18926.1 (1)

 

diphosphomevelonate decarboxylase (MVD)

BAF98285.1 (2)

MEP pathway

1-deoxy-D-xylulose 5-phosphate synthase (DXS) 1-deoxy-D-xylulose 5-phosphate reductoisomerase (DXR)

XP_002533688.1 (2), ABD92702.1 (1), XP_002514364.1 (2), ZP_08629200.1 (1) ABQ53937.1 (1), AAS94121.1 (1), ABD92702.1 (1)

 

2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase (CMS)

BAF98292.1 (1)

 

4-diphosphocytidyl-2 C-methyl-D-erythritol kinase (CMK)

BAF98293.1 (1)

 

2-C-methyl-D-erythritol 2,4- cyclodiphosphate synthase (MCS)

BAF98295.1 (1)

 

4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase (HDS)

BAF98296.1 (6)

 

4-hydroxy-3-methylbut-2-enyl diphosphate reductase (HDR)

ACG55683.1 (1)

  1. * Number of unigene with a hit in nr protein database.