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Table 1 Summary of RNA-seq libraries and flow cells

From: RNA-seq analysis of differential gene expression in liver from lactating dairy cows divergent in negative energy balance

Lane

Flow cell A

Lane

Flow cell B

Lane

Flow cell C

1A

library 1 (4.5 pM)

1B

library 12 (5.5 pM)

1 C

library 2 (5.5 pM)

2A

library1 (5.0 pM)

2B

library 6 (5.5 pM)

2 C

library 3 (5.5 pM)

3A

library 5 (5.5 pM)

3B

library 2 (5.5 pM)

3 C

library 6 (5.5 pM)

4A

library5 (6.0 pM)

4B

library 7 (5.5 pM)

4 C

library 7 (5.5 pM)

5A

library 10 (4.0 pM)

5B

library 9 (5.5 pM)

5 C

PhiX

6A

PhiX

6B

PhiX

6 C

library 8 (5.5 pM)

7A

library 10 (5.5 pM)

7B

library 11 (5.5 pM)

7 C

library 11 (5.5 pM)

8A

library 10 (6.5 pM)

8B

library 4 (5.5 pM)

8 C

library 12 (5.5 pM)

  1. Libraries 1–6 = mild negative energy balance animals. Libraries 7–12 = severe negative energy balance animals. Libraries on the first flowcell were run at different concentrations (4.5–6.5 pM) to determine which concentration yielded optimum cluster yields.