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Table 3 Parameters associated with the QTLs identified in progeny 1 (P1) with a two-QTL test

From: A maximum likelihood QTL analysis reveals common genome regions controlling resistance to Salmonella colonization and carrier-state

Chr1

Progeny

Trait

First QTL (cM)2

Second QTL

(cM)3

LRT4

Flanking markers Q15

(Mb)

Flanking markers Q26

(Mb)

P-value7

SL8

5

P1

CSW4

2

104

48.10

1.32-4.46

31.57-41.62

<0.05

*

9

P1

CAEC

46

56

118.85

6.35-8.848

14.00-16.64

<0.0001

***

9

P1

CSW5

45

52

58.07

6.35

11.64-14.01

<0.0001

***

15

P1

CAEC

8

29

112.14

4.23-5.16

7.46-8.85

<0.005

**

15

P1

CSW4

20

33

48.40

6.15-6.94

7.46-8.85

<0.01

*

22

P1

CAEC

0

28

84.75

1.17

1.53-2.63

<0.05

*

22

P1

CSW5

29

42

59.70

2.63

2.63-3.19

<0.0001

***

24

P1

CAEC

23

51

87.78

3.56

5.13-6.13

<0.05

*

24

P1

CSW4

44

51

38.59

5.13

5.13-6.13

<0.0001

***

  1. 1Chromosome number.
  2. 2Location of the first QTL.
  3. 3Location of the second QTL.
  4. 4Likelihood Ratio Test.
  5. 5Positions of the two markers flanking the first QTL peak.
  6. 6Positions of the two markers flanking the second QTL peak.
  7. 7P-values of the H0 vs H2 test obtained by 1000 chromosome-wide permutations.
  8. 8 H0 vs H2 significance level: *significant at P < 0.05 at the chromosome-wide level, ** significant at P < 0.01 at the chromosome-wide level, *** significant at P < 0.05 at the genome-wide level.