Table 1 List of CAPS markers polymorphic between Arabidopsis ecotypes Col-0 and Nd-0
CAPS marker | Restriction enzyme | Primer Sequence |
|---|---|---|
1H1L-1.6 | Rsa I, Tsp 509I | F:CTAGAGCTTGAAAGTTGATG R:TTGAGTCCTTCTTGTCTG |
20B4L-1.6 | Dde I | F:CTAAGATGGGAATGTTGG R:GAACTCATTGTATGGACC |
40E1T7 | Acc I | F:GGTCCACTTTGATTCAAGAT R:GCAAGCGATAGAACATAACG |
AF2 | Dde I | F:TCGTCGTTTTTGTTTCCTTTTTCTTA R:CCATTCATTTAGGCCCCGACTTTC |
B9-1.8 | Taq I | F:CATCTGCAACATCTTCCCCAG R:CGTATCCGCATTTCTTCACTGC |
CAT2 | Taq I, Tsp 509I | F:GACCAGTAAGAGATCCAGATACTGCG R:CACAGTCATGCGACTCAAGACTTG |
ER | Dde I | F:GAGTTTATTCTGTGCCAAGTCCCTG R:CTAATGTAGTGATCTGCGAGGTAATC |
G4711 | Dde I | F:CCTGTGAAAAACGACGTGCAGTTTC R:ACCAAATCTTCGTGGGGCTCAGCAG |
GPA1.4 | Tsp 509I | F:ATTCCTTGGTCTCCATCATC R:GGGATTTGATGAAGGAGAAC |
JM411 | Dde I | F:GCGAACCACTAAGAACTA R:CTCGACTTTGCCAAGGAT |
LFY3 | Rsa I | F:GACGGCGTCTAGAAGATTC R:TAACTTATCGGGCTTCTGC |
MI342 | Tsp 509I | F:GAAGTACAGCGGCTCAAAAAGAAG R:TTGCTGCCATGTAATACCTAAGTG |
M555 | Acc I | F:CCTTTAATTAGTTATCAAATC R:CTCTTGAATTATTAAGTTGACTAG |
M59 | Rsa I, Tsp 509I | F:GTGCATGATATTGATGTACGC R:GAATGACATGAACACTTACACC |
MBK23A | Taq I | F:GATGATTAGGCGCAAAATTGAG R:ATTACCAGCCTGGCTTCAGG |
PAI1.1 | Taq I, Rsa I, Tsp 509I | F:GATCCTAAGGTATTGATATGATG R:GGTACAATTGATCTTCACTATAG |
T20D161 | Taq I, Rsa I, Tsp 509I | F:CGTATTTGCTGATTCATGAGC R:ATGGTTTACACTTGACAGAGC |
T6P5-4.8 | Rsa I | F:TGAAAGACACCTGGGATAGGC R:CCAACTTTCGGGTCGGTTCC |