Table 2 Chromosome wide significant boar taint QTLs confirmed by a haplotype analysis mapped to Sscrofa10.2 in different breeds.
| Â | Â | QTDT | QFAM | Â | Â |
|---|---|---|---|---|---|
SSC# | Trait | p-value | emperical p-value | Peak (Mb) | Interval (Mb) |
Duroc | Â | Â | Â | Â | Â |
3 | log Skatole | 2.0E-05' | 8.0E-05 | 19.615 | 16.518-20.52 |
3 | log Androstenone | 8.0E-05 | 4.0E-05 | 120.04 | 113.99-122.62 |
5 | log S/I-index | 1.0E-05 | 2.0E-05 | 18.728 | 18.728-18.962 |
6 | log Androstenone | 1.0E-05 | 3.0E-05 | 75.721 | 75.721-76.450 |
10a | log Indole | 4.0E-05 | NS | 7.961 | 7.793-18.265 |
10b | log Indole | 2.0E-05 | NS | 62.985 | 52.066-63.550 |
12 | log Androstenone | 1.0E-05 | 2.0E-05 | 41.225 | 41.209-46.114 |
14 | log Androstenone | 6.0E-05 | 6.0E-05 | 19.421 | 19.421-21.826 |
Landrace | Â | Â | Â | Â | Â |
1 | log Androstenone | 3.0E-05 | NS | 164.281 | 164.281-166.282 |
2a | log Androstenone | 2.0E-05 | 6.0E-05 | 98.469 | 85.522-106.398 |
2b | log Androstenone | 2.0E-05 | 4.0E-05 | 142.568 | 142.568-144.814 |
5 | log S/I-index | 6.0E-06 | 4.0E-05 | 87.29 | 62.442-88.563 |
6 | log Indole | 7.0E-06 | 3.0E-05 | 134.996 | 134.141-140.591 |
7 | log Androstenone | 1.0E-06* | 1.0E-05 | 40.375 | 2.451-40.421 |
11 | log Indole | 4.0E-05 | 4.0E-05 | 87.549 | single SNP |
12 | log Androstenone | 5.0E-05 | 4.0E-05 | 45.898 | single SNP |
14 | log S/I-index | 3.0E-05 | 3.0E-05 | 152.887 | 149.608-153.745 |
14 | log Indole | 2.0E-06* | 1.0E-05 | 151.637 | 150.832-153.786 |
15 | log Indole | 4.0E-05 | 4.0E-05 | 17.709 | 2.724-17.767 |
Yorkshire | Â | Â | Â | Â | Â |
6a | log S/I-index | NS | 1.0E-05 | 76.056 | 75.839-80.408 |
6b | log S/I-index | NS | 2.0E-05 | 157.089 | 155.897-157.734 |
7 | log S/I-index | 3.0E-05' | 1.0E-05 | 99.096 | 98.947-101.548 |
8 | log S/I-index | NS | 2.0E-05 | 38.293 | 35.328-40.051 |
9 | log Skatole | 7.0E-06 | 1.0E-05 | 30.292 | 15.055-30.539 |
11b | log Androstenone | 8.0E-06 | 7.0E-05 | 75.129 | 78.672-80.006 |
12 | log Androstenone | 2.0E-05 | 7.0E-05 | 37.443 | 35.941-45.383 |
14 | log Androstenone | 5.0E-06 | 2.0E-05 | 138.164 | single SNP |
14 | log Indole | 6.0E-07** | 1.0E-05 | 152.48 | 149.326-153.593 |