Skip to main content

Table 1 ABySS assembly summaries

From: The venom-gland transcriptome of the eastern diamondback rattlesnake (Crotalus adamanteus)

   

Total

Longest

Contigs

Contigs

   

Total

k

c

e

contigs

contig

> 200 nt

>N50

Median

Mean

N50

length

51

2

2

2,168,050

15,079

147,942

27,410

364

592

790

8.77 × 107

51

10

2

329,609

17,493

37,575

6,399

571

985

1,635

3.70 × 107

51

10

10

337,039

17,459

37,944

6,390

554

967

1,621

3.67 × 107

51

20

20

191,367

15,906

27,546

4,931

529

878

1,401

2.42 × 107

51

30

30

135,961

13,472

21,986

4,034

494

812

1,256

1.79 × 107

51

50

50

87,092

10,380

15,461

2,955

463

737

1,088

1.14 × 107

51

100

10

42,366

8,553

8,510

1,725

432

658

906

5.60 × 106

51

100

100

42,251

8,552

8,401

1,707

431

656

899

5.52 × 106

51

1000

1000

2,319

5,232

571

123

428

631

797

3.61 × 105

61

2

2

1,769,274

17,166

141,471

25,105

361

604

827

8.55 × 107

61

10

2

263,688

17,493

34,076

5,959

618

1,032

1,691

3.52 × 107

61

10

10

272,814

17,459

35,002

6,036

586

998

1,651

3.50 × 107

61

20

20

154,459

15,906

25,114

4,575

545

891

1,408

2.24 × 107

61

30

30

109,994

10,070

19,994

3,721

496

808

1,232

1.62 × 107

61

50

50

70,029

10,349

13,916

2,675

455

725

1,073

1.01 × 107

61

100

10

32,476

8,300

7,318

1,479

426

655

894

4.79 × 106

61

100

100

32,392

7,822

7,231

1,463

423

652

893

4.72 × 106

61

1000

1000

1,709

5,209

531

114

424

614

798

3.27 × 105

71

2

2

1,431,412

15,641

131,742

22,422

360

617

870

8.13 × 107

71

10

2

208,036

17,484

29,793

5,393

683

1,101

1,785

3.28 × 107

71

10

10

219,099

17,432

31,400

5,567

629

1,041

1,705

3.27 × 107

71

20

20

122,216

14,372

21,816

4,052

581

928

1,460

2.03 × 107

71

30

30

86,599

10,416

17,138

3,249

524

835

1,272

1.43 × 107

71

50

50

54,694

10,341

11,925

2,313

464

729

1,075

8.70 × 106

71

100

10

23,980

7,817

6,183

1,253

424

650

892

4.02 × 106

71

100

100

23,997

7,810

6,119

1,239

419

644

889

3.95 × 106

71

1000

1000

1,199

5,202

443

87

444

660

885

2.93 × 105

81

2

2

1,142,924

15,303

120,593

19,697

354

625

911

7.54 × 107

81

10

2

158,781

17,713

24,939

4,721

788

1,202

1,898

3.00 × 107

81

10

10

174,032

17,688

27,366

5,005

691

1,096

1,774

3.00 × 107

81

20

20

92,627

15,784

17,715

3,396

654

1,011

1,573

1.79 × 107

81

30

30

64,866

9,868

13,697

2,666

592

904

1,366

1.24 × 107

81

50

50

39,613

10,328

9,358

1,874

513

778

1,130

7.28 × 106

81

100

10

16,303

10,149

4,777

970

454

687

963

3.28 × 106

81

100

100

16,493

10,155

4,817

981

438

671

943

3.23 × 106

81

1000

1000

889

5,198

381

82

454

649

790

2.47 × 105

91

2

2

932,237

15,694

108,954

17,394

344

622

936

6.79 × 107

91

10

2

124,647

17,713

20,420

4,025

880

1,293

2,007

2.64 × 107

91

10

10

142,306

17,687

23,525

4,428

727

1,126

1,804

2.65 × 107

91

20

20

72,117

15,792

13,614

2,702

752

1,108

1,712

1.51 × 107

91

30

30

48,540

15,792

9,949

2,009

700

1,023

1,529

1.02 × 107

91

50

50

27,581

10,199

6,477

1,336

624

901

1,309

5.84 × 106

91

100

10

10,503

10,105

3,081

658

564

816

1,155

2.52 × 106

91

100

100

10,770

10,149

3,308

705

528

769

1,078

2.54 × 106

91

1000

1000

598

3,008

342

76

438

621

754

2.12 × 105