Short read sequence typing (SRST): multi-locus sequence types from short reads

BMC Genomics

Table 1 High throughput read sets analyzed in this study

Species	N	Read type	Accession (reads)	MLST database	Reference genome
Staphylococcus aureus[4]	67	37 bp SE	ERP000070	http://saureus.mlst.net/	NC_002952.2
Salmonella bongori[17]	18	54 bp PE	ERP000328	http://mlst.ucc.ie/mlst/	NC_011900.1
Streptococcus pneumoniae[6]	256	54 bp PE	ERP000139	http://spneumoniae.mlst.net/	NC_011149.1
Shigella sonnei[19]	188	54 bp PE	ERP000182	http://mlst.ucc.ie/mlst/	NC_000913.2

ISSN: 1471-2164