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Table 2 Chromosomal and plasmid analysis of E. coli outbreak strains

From: Short read sequence typing (SRST): multi-locus sequence types from short reads

Strain

E. coli ST (score)

IncI1 ST (score)

Accession

Reference

C227-11

ST678 (24660)

ST31 (2320)

SRP000285

[27]

C236-11

ST678 (27131)

ST31 (2723)

SRP008003

[27]

11-3677

ST678 (20353)

ST31 (11286)

SRP008034

[27]

11-3798

ST678 (10400)

ST31 (6848)

SRP008035

[27]

TY-2482

ST678 (1042)

ST31 (326.5)

SRP007327

[28]

  1. The SRST ST calls and scores are indicated for the chromosome (E. coli scheme) and plasmid (IncI1 scheme). No other plasmids with MLST schemes available (IncN, IncHI1, IncHI2) were detected using SRST