Figure 3From: Discovery of novel variants in genotyping arrays improves genotype retention and reduces ascertainment biasGlobal intensity patterns discriminate between classical inbred, genetically divergent and hybrid samples. Hybridization intensity for all SNP probes for A) C57BL6/J, a classical inbred strain and also the mouse reference genome, C) CAST/EiJ, an inbred strain derived from a wild-caught M. m. castaneus mouse, and B) a (C57BL/6JxCAST/EiJ)F1 hybrid. The x-axis represents the absolute value of the contrast (A-B) and the y-axis is the mean intensity. The density of probe sets is represented by a color gradient from purple (low) to green (high). VINOs are seen in the lower-left corner of each plot.Back to article page