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Table 4 Gene ontology based classification of differentially expressed genes

From: Transcriptome sequencing of Eucalyptus camaldulensis seedlings subjected to water stress reveals functional single nucleotide polymorphisms and genes under selection

GO CATEGORY

TOTAL GENES

CHANGED GENES

up-regulated

  

GO:0042221_response_to_chemical_stimulus

1271

123

GO:0050896_response_to_stimulus

2445

191

GO:0009266_response_to_temperature_stimulus

288

46

GO:0009408_response_to_heat

114

28

GO:0009628_response_to_abiotic_stimulus

974

94

GO:0006950_response_to_stress

1398

119

GO:0009644_response_to_high_light_intensity

42

16

GO:0009642_response_to_light_intensity

63

18

GO:0000302_response_to_reactive_oxygen_species

55

16

GO:0006979_response_to_oxidative_stress

178

29

GO:0042542_response_to_hydrogen_peroxide

36

13

GO:0009725_response_to_hormone_stimulus

551

55

GO:0010033_response_to_organic_substance

752

68

GO:0009415_response_to_water

149

24

GO:0009719_response_to_endogenous_stimulus

593

56

GO:0009737_response_to_abscisic_acid_stimulus

254

32

GO:0009414_response_to_water_deprivation

144

22

GO:0010035_response_to_inorganic_substance

360

38

GO:0006970_response_to_osmotic_stress

289

31

GO:0009651_response_to_salt_stress

269

28

Down-regulated

  

GO:0009698_phenylpropanoid_metabolic_process

111

39

GO:0009699_phenylpropanoid_biosynthetic_process

83

32

GO:0019748_secondary_metabolic_process

230

57

GO:0007167_enzyme_linked_receptor_protein_signaling

94

31

GO:0007169_transmembrane_receptor_protein_tyrosine_kinase_signaling_pathway

94

31

GO:0007166_cell_surface_receptor_linked_signaling

113

32

GO:0009813_flavonoid_biosynthetic_process

44

19

GO:0019438_aromatic_compound_biosynthetic_process

151

37

GO:0006725_cellular_aromatic_compound_metabolic_proces

227

48

GO:0009812_flavonoid_metabolic_process

53

20

GO:0006629_lipid_metabolic_process

484

80

GO:0071555_cell_wall_organization

81

24

GO:0009653_anatomical_structure_morphogenesis

398

66

GO:0071554_cell_wall_organization_or_biogenesis

138

32

GO:0009664_plant-type_cell_wall_organization

38

15

GO:0042545_cell_wall_modification

60

19

GO:0008610_lipid_biosynthetic_process

259

47

GO:0007047_cellular_cell_wall_organization

41

15

GO:0071669_plant-type_cell_wall_organization_or_biogenesis

75

21

GO:0009827_plant-type_cell_wall_modification

19

10

GO:0070882_cellular_cell_wall_organization_or_biogenesis

89

23

GO:0048869_cellular_developmental_process

323

54

GO:0009808_lignin_metabolic_process

35

13

  1. Gene ontology categories of up-regulated and down-regulated genes under water stress conditions (S1) among the most significantly differentiated transcripts. Total genes is the number of genes in a category, changed genes are the number of gene showed differential expression and FDR (<0.0001) is the one-sided Fisher’s exact p value corrected for multiple comparisons.