Table 8 Positively selected genes with differential gene expression between control (C1) and stress (S1) treatments
Gene_id | Non-syn_length1 | Syn_length2 | Non-syn3 | Syn4 | Ka/Ks | FDR | TAIR annotation |
|---|---|---|---|---|---|---|---|
Eucgr.B02730 | 258 | 120 | 11 | 0 | 5.6 | 7E-16 | no-hit |
Eucgr.E04298 | 494 | 194 | 10 | 0 | 4.3 | 0.00 | unknown |
Eucgr.J02063 | 240 | 111 | 15 | 1 | 3.7 | 8E-09 | Histone |
Eucgr.H04702 | 312 | 126 | 8 | 0 | 3.6 | 8E-12 | beta-ketoacyl reductase 1 |
Eucgr.B02265 | 353 | 166 | 6 | 0 | 3.3 | 2E-05 | pleckstrin homologue 1 |
Eucgr.F04064 | 129 | 60 | 6 | 0 | 3.3 | 0.01 | histone acetyltransferase |
Eucgr.H04620 | 312 | 141 | 6 | 0 | 3.2 | 6E-13 | unknown |
Eucgr.D01191 | 841 | 398 | 12 | 1 | 3.1 | 0.01 | Ubiquitin-conjugating enzyme |
Eucgr.D01723 | 537 | 231 | 28 | 3 | 3.1 | 3E-11 | glycine-rich protein |
Eucgr.C02248 | 151 | 65 | 6 | 0 | 3 | 0.00 | unknown |
Eucgr.A01862 | 419 | 187 | 12 | 1 | 2.9 | 0.00 | SAM |
Eucgr.H03577 | 348 | 153 | 12 | 1 | 2.9 | 0.01 | nuclear factor Y |
Eucgr.D01717 | 385 | 152 | 6 | 0 | 2.8 | 0.00 | Development and Cell Death |
Eucgr.B02882 | 357 | 159 | 5 | 0 | 2.7 | 0.00 | unknown |
Eucgr.G00701 | 103 | 47 | 5 | 0 | 2.7 | 0.01 | no-hit |
Eucgr.K01312 | 362 | 163 | 5 | 0 | 2.7 | 7E-07 | Late embryogenesis abundant |
Eucgr.J03180 | 349 | 149 | 5 | 0 | 2.6 | 0.02 | unknown |
Eucgr.B03466 | 405 | 171 | 11 | 1 | 2.5 | 0.04 | unknown |
Eucgr.F00424 | 426 | 177 | 11 | 1 | 2.5 | 0.01 | nucleoside triphosphate hydrolase |
Eucgr.I01743 | 145 | 59 | 5 | 0 | 2.5 | 0.00 | unknown |
Eucgr.G01464 | 61 | 29 | 4 | 0 | 2.4 | 0.00 | no-hit |
Eucgr.C00195 | 311 | 142 | 4 | 0 | 2.3 | 0.03 | glutamine dumper |
Eucgr.K02172 | 796 | 329 | 27 | 4 | 2.3 | 2E-05 | proteolysis |
Eucgr.D01225 | 367 | 161 | 4 | 0 | 2.2 | 0.00 | Cupredoxin superfamily protein |
Eucgr.K01587 | 505 | 233 | 18 | 3 | 2.2 | 0.00 | Calcium-binding EF-hand family protein |
Eucgr.G02486 | 272 | 112 | 4 | 0 | 2.1 | 1E-21 | NAC-like |
Eucgr.H04886 | 638 | 265 | 9 | 1 | 2.1 | 0.03 | A20/AN1-like zinc finger |
Eucgr.I01744 | 123 | 51 | 4 | 0 | 2.1 | 1E-06 | no-hit |
Eucgr.L02163 | 143 | 61 | 9 | 1 | 2.1 | 0.00 | TRAF-like |
Eucgr.C01903 | 219 | 90 | 4 | 0 | 2 | 7E-07 | UDP-glucosyl transferase |
Eucgr.F01425 | 160 | 65 | 4 | 0 | 2 | 2E-10 | glutathione S-transferase |
Eucgr.I01164 | 351 | 156 | 8 | 1 | 2 | 1E-05 | CXE12 |
Eucgr.C02013 | 720 | 331 | 28 | 6 | 1.9 | 1E-10 | unknown |
Eucgr.E01742 | 103 | 48 | 3 | 0 | 1.9 | 0.01 | agenet domain-containing |
Eucgr.G00935 | 80 | 31 | 4 | 0 | 1.9 | 0.01 | no-hit |
Eucgr.I02449 | 307 | 134 | 12 | 2 | 1.9 | 0.02 | no-hit |
Eucgr.J03046 | 168 | 78 | 3 | 0 | 1.9 | 2E-22 | pleiotropic drug resistance |
Eucgr.A02694 | 128 | 59 | 3 | 0 | 1.8 | 5E-17 | UDP-glucosyl transferase |
Eucgr.B01852 | 339 | 138 | 12 | 2 | 1.8 | 1E-34 | soybean gene regulated by cold-2 |
Eucgr.B02741 | 317 | 142 | 7 | 1 | 1.8 | 2E-42 | heat shock protein 17.4 |
Eucgr.D02113 | 186 | 84 | 3 | 0 | 1.8 | 1E-11 | ethylene responsive element binding factor |
Eucgr.E00479 | 58 | 26 | 3 | 0 | 1.8 | 0.00 | unknown |
Eucgr.F03056 | 1150 | 473 | 12 | 2 | 1.8 | 0.00 | NTH/VHS family |
Eucgr.H02910 | 254 | 106 | 12 | 2 | 1.8 | 0.01 | Calcium-binding EF-hand family |
Eucgr.A02080 | 67 | 29 | 3 | 0 | 1.7 | 0.00 | unknown |
Eucgr.B03040 | 176 | 76 | 3 | 0 | 1.7 | 9E-06 | unknown |
Eucgr.D00574 | 477 | 208 | 3 | 0 | 1.7 | 2E-26 | GDSL-like Lipase/Acylhydrolase |
Eucgr.D01956 | 605 | 250 | 7 | 1 | 1.7 | 2E-18 | cytochrome P450 |
Eucgr.F03511 | 188 | 79 | 3 | 0 | 1.7 | 0.05 | no-hit |
Eucgr.H03533 | 55 | 23 | 3 | 0 | 1.7 | 0.01 | Haloacid dehalogenase-like hydrolase |
Eucgr.I00325 | 221 | 91 | 3 | 0 | 1.7 | 0.03 | disproportionating enzyme |
Eucgr.L03100 | 466 | 194 | 3 | 0 | 1.7 | 3E-08 | cytochrome P450 |
Eucgr.B03756 | 184 | 74 | 3 | 0 | 1.6 | 1E-12 | beta-6 tubulin |
Eucgr.C00342 | 193 | 80 | 14 | 3 | 1.6 | 0.00 | cytochrome P450 |
Eucgr.D00603 | 111 | 46 | 3 | 0 | 1.6 | 0.00 | Yippee family |
Eucgr.E00452 | 400 | 164 | 3 | 0 | 1.6 | 0.00 | unknown |
Eucgr.E03921 | 254 | 107 | 14 | 3 | 1.6 | 4E-25 | Cystatin/monellin |
Eucgr.E04006 | 104 | 43 | 3 | 0 | 1.6 | 0.01 | pyridoxal phosphate-dependent |
Eucgr.F00810 | 31 | 17 | 2 | 0 | 1.6 | 0.01 | RNI-like superfamily protein |
Eucgr.F02734 | 205 | 83 | 3 | 0 | 1.6 | 0.03 | unknown |
Eucgr.G02336 | 616 | 269 | 14 | 3 | 1.6 | 0.00 | unknown |
Eucgr.G02823 | 394 | 159 | 3 | 0 | 1.6 | 0.02 | para-aminobenzoate (PABA) synthase |
Eucgr.G03355 | 724 | 311 | 18 | 4 | 1.6 | 1E-19 | NAD(P)-binding Rossmann-fold |
Eucgr.H00155 | 459 | 183 | 15 | 3 | 1.6 | 2E-13 | glutathione S-transferase |
Eucgr.H00996 | 111 | 45 | 3 | 0 | 1.6 | 3E-06 | WRKY DNA-binding protein |
Eucgr.H01946 | 252 | 99 | 3 | 0 | 1.6 | 2E-08 | unknown |
Eucgr.H04711 | 189 | 75 | 3 | 0 | 1.6 | 1E-12 | beta-ketoacyl reductase |
Eucgr.H05152 | 281 | 115 | 3 | 0 | 1.6 | 0.00 | GA20OX1 |
Eucgr.K01016 | 236 | 106 | 13 | 3 | 1.6 | 6E-12 | unknown |
Eucgr.L03046 | 171 | 78 | 6 | 1 | 1.6 | 1E-07 | no-hit |
Eucgr.A01283 | 476 | 190 | 10 | 2 | 1.5 | 5E-06 | far-red elongated hypocotyl |
Eucgr.C02545 | 651 | 261 | 10 | 2 | 1.5 | 0.02 | WRKY DNA-binding protein |
Eucgr.C03738 | 53 | 19 | 3 | 0 | 1.5 | 0.00 | no-hit |
Eucgr.E00907 | 198 | 87 | 6 | 1 | 1.5 | 7E-07 | NB-ARC domain-containing disease resistance |
Eucgr.E02617 | 80 | 40 | 2 | 0 | 1.5 | 1E-07 | SAM |
Eucgr.E03833 | 453 | 195 | 6 | 1 | 1.5 | 6E-06 | C2 calcium/lipid-binding |
Eucgr.F00172 | 57 | 21 | 3 | 0 | 1.5 | 3E-05 | cytochrome P450 |
Eucgr.F01135 | 1007 | 418 | 10 | 2 | 1.5 | 5E-09 | NB-ARC domain-containing disease resistance |
Eucgr.F01523 | 66 | 24 | 3 | 0 | 1.5 | 4E-07 | no-hit |
Eucgr.F01700 | 152 | 58 | 3 | 0 | 1.5 | 7E-13 | sterol methyltransferase 2 |
Eucgr.F04454 | 254 | 97 | 3 | 0 | 1.5 | 0.00 | unknown |
Eucgr.G00423 | 159 | 69 | 6 | 1 | 1.5 | 4E-19 | no-hit |
Eucgr.G01862 | 673 | 317 | 15 | 4 | 1.5 | 3E-11 | EXORDIUM like |
Eucgr.H02734 | 30 | 15 | 2 | 0 | 1.5 | 5E-05 | F-box family |
Eucgr.I00883 | 829 | 362 | 36 | 10 | 1.5 | 8E-20 | no-hit |
Eucgr.I01025 | 2 | 1 | 2 | 0 | 1.5 | 0.02 | photosystem II subunit O-2 |
Eucgr.J00894 | 163 | 62 | 3 | 0 | 1.5 | 1E-17 | Heavy metal transport/detoxification superfamily protein |
Eucgr.J02210 | 760 | 326 | 6 | 1 | 1.5 | 2E-07 | Tetratricopeptide repeat |
Eucgr.K01084 | 101 | 49 | 2 | 0 | 1.5 | 4E-05 | protein kinase C substrate |
Eucgr.L01514 | 81 | 30 | 3 | 0 | 1.5 | 0.00 | unknown |