Table 3 TaqMan genotyping of SNPs in the Grey region
From: Copy number expansion of the STX17 duplication in melanoma tissue from Grey horses
Polymorphism1 | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
ID | Breed | Grey | SNP0 | SNP1 | Dup | SNP2 | SNP3 | SNP4 | SNP5 | SNP6 | SNP7 |
231 | Arabian | g/g | A | - | C | G | C | A | |||
446 | Thoroughbred | g/g | A | - | C | G | C | A | |||
1107 | New Forest Pony | g/g | A | - | C | G | C | A | |||
1268 | Icelandic | g/g | A | - | C | G | C | A | |||
2857 | Connemara | g/g | A | - | C | G | C | A | |||
5772 | Shetland | g/g | A | - | C | G | C | A | |||
S062 | Lipizzaner | g/g | A | - | C | G | C | A | |||
6605 | Shetland | g/g | A | - | C | G | T/C | A/G | G/A | A | |
1270 | Icelandic | g/g | A | - | C | - | T/C | A/G | G/A | A | |
435 | Arabian | g/g | A | - | C/T* | G | C | A | |||
456 | Arabian: Anc | g/g | A | - | C/T | G | C | A | |||
800 | Arabian: Anc | g/g | A | - | C/T | G | C | A | A | A | |
6972 | Welsh | g/g | A | - | C/T | G | C | A | |||
D011 | Lipizzaner | g/g | A | - | C/T* | G | C | A | |||
S046 | Lipizzaner | g/g | A | - | C/T | G | C | A | |||
6942 | New Forest Pony | G/g | A | +/− | C | G | C | G | A | A | |
S057 | Lipizzaner | G/g | A | +/− | C | G | C | G | A | A | |
899 | Arabian | G/g | A | +/− | C | A/G | T/C | A/G | A or G/A | A/T | |
222 | Arabian | G/g | A | +/− | C | A/G | T/C | G/A | |||
5726 | Connemara | G/g | A | +/− | C | A/G | T/C | G/A | |||
6591 | Connemara | G/g | A | +/− | C | A/G | T/C | G/A | |||
D081 | Lipizzaner | G/g | A | +/− | C | A/G | T/C | G/A | |||
D076 | Lipizzaner | G/g | A/G | +/− | C | A/G | T/C | G/A | |||
213 | Arabian | G/g | A | +/− | C/T | A/G | T/C | G/A | |||
D091 | Lipizzaner | G/g | A | +/− | C/T | A/G | T/C | G/A | |||
D007 | Lipizzaner | G/g | A/G | +/− | C/T | A/G | T/C | G/A | |||
D010 | Lipizzaner | G/g | A/G | +/− | C/T* | A/G | T/C | G/A | |||
678 | Arabian | G/g | A | +/− | C/T | G | T/C | G/A | |||
D004 | Lipizzaner | G/g | A | +/− | C/T | G | T/C | G/A | |||
452 | Thoroughbred | G/g | A | +/− | C | G | T/C | G/A | |||
3156 | Lipizzaner | G/g | A | +/− | C | G | T/C | G/A | |||
6577 | Welsh | G/g | A | +/− | C | G | T/C | G/A | |||
6611 | Shetland | G/g | A | +/− | C | G | T/C | G/A | |||
SP1 | Connemara:Sp | G/g | A | +/− | C | G | T/C | G/A | |||
SP2 | Connemara:Sp | G/g | A | +/− | C | G | T/C | G/A | |||
SP3 | Connemara:Sp | G/g | A | +/− | C | G | T/C | G/A | |||
SP4 | Connemara:Sp | G/g | - | +/− | C | G | T/C | G/A | |||
D192 | Lipizzaner | G/g | A/G | +/− | C | G | T/C | G/A | |||
1271 | Icelandic | G/g | A | +/− | C | G | T | A | G | A/T | |
P023 | Lipizzaner | G/g | A/T | A/G | +/− | C | A/G | T/C | G/A | ||
S065 | Lipizzaner | G/g | A/T | A/G | +/− | C | - | T/C | G/A | ||
P038 | Lipizzaner | G/g | A/T | A/G | +/− | C | A/G | T/C | G/A | ||
L034 | Lipizzaner | G/g | A/T | A/G | +/− | C | A/G | - | G/A | ||
P076 | Lipizzaner | G/g | A/T | A/G | +/− | C | A/G | T/C | G/A | ||
L040 | Lipizzaner | G/g | A/T | A/G | +/− | C/T | A/G | T/C | G/A | ||
L049 | Lipizzaner | G/g | A/T | A/G | +/− | C/T | A/G | T/C | G/A | ||
D007 | Lipizzaner | G/g | A/T | A/G | +/− | C/T | A/G | T/C | G/A | ||
230 | Arabian | G/G | A | +/+ | C | A | T | G | |||
L010 | Lipizzaner | G/G | A | +/+ | C | A | T | G | |||
D080 | Lipizzaner | G/G | A/G | +/+ | C | A | T | G | |||
D006 | Lipizzaner | G/G | G | +/+ | C | A | T | G | |||
399 | Arabian | G/G | A | +/+ | C/T | A | T | G | |||
857 | Arabian | G/G | A | +/+ | C/T* | A | T | G | |||
L004 | Lipizzaner | G/G | A | +/+ | C/T | A | T | G | |||
D089 | Lipizzaner | G/G | A/G | +/+ | C/T | A | T | G | |||
D098 | Lipizzaner | G/G | G | +/+ | C/T | A | T | G | |||
6210 | Lipizzaner | G/G | A | +/+ | C | A/G | T | G | |||
D009 | Lipizzaner | G/G | A/G | +/+ | C | A/G | T | G | |||
D079 | Lipizzaner | G/G | A | +/+ | C/T | A/G | T | G | |||
P086 | Lipizzaner | G/G | A | +/+ | C/T* | A/G | T | G | |||
D003 | Lipizzaner | G/G | A/G | +/+ | C/T | A/G | T | G | |||
L053 | Lipizzaner | G/G | A/G | +/+ | C/T* | A/G | T | G | |||
L024 | Lipizzaner | G/G | A | +/+ | C | G | T | G | |||
6580 | Welsh | G/G | A | +/+ | C/T | G | T | G | |||
D102 | Lipizzaner | G/G | A | +/+ | C/T | G | T | G | |||
L090 | Lipizzaner | G/G | A | +/+ | C/T* | G | T | G | |||