Skip to main content

Table 1 Genes predicted from DNA sequence within the  Rhg1  -a/  Rfs2  locus encoded by BAC 73p06 (81, 157 bp) from Forrest (resistant) and sequence contig from A3244 (susceptible; AX196295)

From: The receptor like kinase at Rhg1-a/Rfs2 caused pleiotropic resistance to sudden death syndrome and soybean cyst nematode as a transgene by altering signaling responses

Gene #

Annotation

Forrest

A3244

EST

Marker

SIUC_Sat_−35 (35 bp)

1,770

11,870

na

1 (5)

NADP redox coenzyme-like

5,959–7,947

16,234–18,215

AW185583

2 (6)

Predicted protein

14,800–10,888

25,760–21,294

BG550903

Marker

SIUC_Scaa-23 (19 bp)

13,800

23,900

na

3 (7)

Predicted protein

23,795–18,782

34,265–28,983

TC63131

Marker

SIUC_Sat_001 (2 bp)

24,500

34,600

na

4 (8)

Predicted protein

30,076–28,429

40,482–38,327

na

Marker

SIUC_InD + 3.5 (53 bp)

33,900

44,000

na

Marker

SIUC_Sca_005/Sac_013 (4 bp)

36,400

46,700

na

5 (9)

Receptor like kinase (  Rhg1  -a/  Rfs2  )

36,448–39,204

46,891–49,573

AF506517*

Marker

SIUC-SattTMD1(19 bp)

38,500

48,500

na

Marker

SIUC_Indel-3.5 (22 bp)

40,150

50,000

na

Marker

STS 10893 (12 bp)

43,800

54,000

GF097715

Marker

SIUC-Satt9.0 (17 bp)

45,250

55,000

na

Marker

SIUC-Satt9.5 (21 bp)

45,500

55,000

na

6 (10)

Variant diphenol oxidase

47,930–52,465

58,247–62,782

AY113187*

Marker

SIUC-SNP_A/G

56,320

66,637

na

7 (11)

Na/H antiporter-like 1

57,661–55,772

67,540–64,896

na

Marker

SIUC-Satt22/Indel22 (20 bp)

58,500

58,500

na

Marker

BARC-Satt309 (17 bp)

61,100

71,400

na

8 (12)

Na/H antiporter-like 2

64,165–60,904

74,602–69,934

AW279576*

9 (13)

DNA helicase-like 1

64,996–73,760

75,245–75,418

na

Marker

SIUC-Sat_027(3 bp)

65,570

75,881

na

10 (14)

DNA helicase-like 2

70,601–74,056

80,601–84,056

BF425110

Marker

SIUC- ATG4

74,150

84,400

na

Marker

SIUC- Sat_37

74,250

84,500

na

Marker

Minisat 2/SIUC-Sctt39 (45 bp)

75,800

85,900

na

Marker

SIUC-Sat_40 (38 bp)

79,500

89,600

na

  1. Shown are; the gene numbers in the larger sequenced interval; the sequence coordinates from the predicted 5′ translation start to 3′ translation stop; and the presence of ESTs in Genbank (May 2012) with homology to the predicted genes. Marker coordinates are listed. Intra-geneic markers were italicized. Genes were bold face. Marker positions are rounded to nearest 10 bp except for SNP markers which were exact. The * indicated the aligned EST and mRNA were from soybean, Glycine max. The plasmid pSBHB94 encompassed from 30,423- 40–194 bp in BAC 73p06.