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Table 4 Expression data of predicted conidiation genes

From: The carbon starvation response of Aspergillus niger during submerged cultivation: Insights from the transcriptome and secretome

   

Expressiona

 

Fold changesb

 

FDR q-valuesb

ORF

Gene

(Predicted) function

Expc

Day 1

Day 3

Day 6

 

Day 1

Day 3

Day 6

 

Day 1

Day 3

Day 6

Fluffy genes

An14g03390

fluG

Synthesis of small extracellular factor

1.9

1.0

1.3

1.8

 

0.5

0.7

0.9

 

3.1E-08

3.7E-05

3.0E-01

An02g03160

flbA

Regulator of G-protein signalling

0.9

0.8

0.9

1.2

 

0.9

1.0

1.4

 

3.3E-01

7.9E-01

5.4E-04

An15g03710

flbB

Transcription factor

2.6

2.5

2.1

2.5

 

1.0

0.8

1.0

 

6.6E-01

3.6E-02

7.8E-01

An02g05420

flbC

Transcription factor

1.1

2.4

4.5

8.2

 

2.1

4.0

7.2

 

4.0E-05

3.3E-08

5.1E-10

An01g04830

flbD

Transcription factor

1.3

8.2

6.3

9.0

 

6.3

4.8

6.9

 

1.0E-09

7.3E-09

6.2E-10

An08g07210

flbE

Activator functionally associated with FlbB

1.9

2.0

3.4

4.5

 

1.1

1.8

2.4

 

3.7E-01

2.3E-06

2.7E-08

An08g06130

fadA

Heterotrimeric G-protein α-subunit

15.2

18.8

18.4

19.8

 

1.2

1.2

1.3

 

2.0E-03

4.0E-03

2.6E-04

Conidiophore development

An01g10540

brlA

Transcription factor

0.4

0.4

13.4

17.0

 

1.1

37.0

46.8

 

8.5E-01

3.5E-10

1.7E-10

An01g03750

abaA

Transcription factor

1.1

1.0

14.1

31.9

 

0.9

12.6

28.6

 

1.7E-01

3.1E-12

1.3E-13

An01g08900

wetA

Transcription factor

0.8

0.8

1.5

4.2

 

0.9

1.8

5.1

 

4.6E-01

5.1E-06

3.2E-11

An02g02150

medA

Transcription factor

1.6

3.6

3.8

2.5

 

2.2

2.3

1.5

 

6.2E-08

2.8E-08

7.1E-05

An05g00480

stuA

Transcription factor

12.5

28.0

49.7

48.7

 

2.2

4.0

3.9

 

5.3E-07

1.0E-09

1.2E-09

Pigmentation genes and hydrophobins

An03g02400

hypC

Hydrophobin

0.6

0.6

261.2

333.0

 

1.1

436.9

557.1

 

8.7E-01

4.0E-10

2.4E-10

An08g09880

 

Hydrophobin

0.5

0.5

180.5

229.9

 

1.1

360.5

459.1

 

8.9E-01

5.0E-10

3.0E-10

An03g02360

hypB

Hydrophobin

0.5

0.4

162.4

214.5

 

0.9

345.1

455.8

 

7.3E-01

5.8E-10

3.2E-10

An14g05350

olvA

Hydrolase involved in pigmentation

1.6

11.1

153.3

205.4

 

6.8

94.2

126.2

 

8.2E-07

3.7E-11

1.8E-11

An01g13660

yA

Laccase invovled in pigmenation

0.8

1.0

46.1

20.6

 

1.2

56.5

25.3

 

3.6E-01

2.3E-11

3.0E-10

An14g05370

brnA

Multicopper oxidase involved in pigmentation

0.7

0.5

33.0

39.9

 

0.7

46.3

55.9

 

3.1E-01

1.8E-09

9.6E-10

An01g10940

hypA

Hydrophobin

0.4

0.4

12.3

15.0

 

0.8

29.3

35.6

 

5.1E-01

1.3E-09

6.4E-10

An07g03340

hypE

Hydrophobin

1.9

2.4

26.9

62.3

 

1.3

14.4

33.4

 

3.9E-01

9.6E-08

3.8E-09

An09g05730

fwnA

Polyketide synthase involved in pigmentation

2.4

1.2

18.8

36.0

 

0.5

7.7

14.7

 

2.6E-03

3.6E-08

1.4E-09

An09g05530

hypG

Hydrophobin

0.5

0.4

0.8

1.7

 

0.8

1.5

3.3

 

2.4E-02

4.4E-04

2.1E-09

  1. amRNA abundance relative (%) to the gamma-actin (An15g00560) encoding transcript during exponential growth.
  2. bFold changes and FDR q-values for comparisons with transcriptome data from the exponential growth phase.
  3. cExponential growth phase.