Table 4 Matching results of TF and TFBS clusters based on sequence information
BLASTCLUST (parameter) | clusters | Matching clusters | match rate | fisher test | |||
|---|---|---|---|---|---|---|---|
TF | TFBS | TF | TFBS | TF-TFBS | TF cluster | odds ratio | p value (<) |
-L 0.60 -S 60 | -L 0.90 -S 60 | 62 | 233 | 39 | 0.629 | 123.973 | 2.2e-16 |
-L 0.65 -S 65 | -L 0.90 -S 65 | 62 | 233 | 40 | 0.645 | 133.192 | 2.2e-16 |
-L 0.70 -S 70 | -L 0.90 -S 70 | 60 | 233 | 40 | 0.667 | 141.485 | 2.2e-16 |
-L 0.75 -S 75 | -L 0.90 -S 75 | 58 | 233 | 39 | 0.672 | 139.486 | 2.2e-16 |
-L 0.80 -S 80 | -L 0.90 -S 80 | 58 | 233 | 40 | 0.690 | 151.705 | 2.2e-16 |
-L 0.85 -S 85 | -L 0.90 -S 85 | 54 | 233 | 37 | 0.685 | 136.013 | 2.2e-16 |
-L 0.90 -S 90 | -L 0.90 -S 90 | 43 | 233 | 27 | 0.628 | 79.789 | 2.2e-16 |
-L 0.95 -S 95 | -L 0.90 -S 95 | 36 | 233 | 25 | 0.694 | 88.648 | 2.2e-16 |