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Figure 1 | BMC Genomics

Figure 1

From: Insights into the genome structure and copy-number variation of Eimeria tenella

Figure 1

Mapping and chromosomal segmentation in the Eimeria tenella genome. One segment of the integrated map (IHM01) is shown, aligned with the supercontigs from the 2010 assembly and the contigs from the 2007 assembly. Labels “Cxxxxxx” are contig numbers in the 2007 assembly; labels “SCxx.y” indicate the supercontig (xx) and contig (y) of the 2010 assembly; HAPPY markers are named as “Ewgxxxxx”. To the right are shown the pseudomolecules for this map segment (built from the 2007 contigs) and for the previously-sequenced Chromosome 1[17]. The diameter of the inner “spindle” indicates A/T content (5 kb sliding window; wider portions are higher in A/T), and colored bands indicate blocks of repeats of CAG (red), the telomere-like repeat unit AGGTTT (green) or other simple-sequence repeats (blue); sequence gaps are grey. The outer transparent “shell” indicates the information content (3rd order Markov entropy) of the sequence (5 kb sliding window) – wider regions correspond to a higher information content, narrower regions to more repeat-rich sequence; the blue-tinted regions are R-segments, whilst the untinted regions are P-segments.

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